View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365_2D_low_19 (Length: 226)
Name: NF0365_2D_low_19
Description: NF0365_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365_2D_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 46502523 - 46502313
Alignment:
| Q |
1 |
aacatcgaatcagcttgtagtcatcgaacactgggtcataaccaaaaccatgaatgttaacaatagtactaataacaggaagatcttcaaaaacagtgcc |
100 |
Q |
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| T |
46502523 |
aacatcgaatcagcttgtagtcatcggacactgggtcataaccaaaaccatgaatgttaacaatagtattaataacaggaagatcctcaaaaacagtgcc |
46502424 |
T |
|
| Q |
101 |
aggaggaaaggctttcagaattgcatgttcaaaagaaccatcaggaatgactttgaattcctctgtagatgggttccacaatacaactttttgcgcaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46502423 |
aggaggaaaggctttcagaattgcatgttcaaaagaaccattaggaatgactttgaattcctctgtagatgggttccacaatacaactttttgtgcaatc |
46502324 |
T |
|
| Q |
201 |
caagtgatgtc |
211 |
Q |
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|||||| |||| |
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| T |
46502323 |
caagtggtgtc |
46502313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 40843596 - 40843788
Alignment:
| Q |
1 |
aacatcgaatcagcttgtagtcatcgaacactgggtcataaccaaaaccatgaatgttaacaatagtactaataacaggaagatcttcaaaaacagtgcc |
100 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||| |||| ||| |||||||||||||||| ||| |
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| T |
40843596 |
aacatcgaatcagcttgtagtcatctgtcac-aggtcataatcaaaaccatgaatgttaacaaaagtaggtataagagggagatcttcaaaaacagagcc |
40843694 |
T |
|
| Q |
101 |
aggaggaaaggctttcagaattgcatgttcaaaagaaccatcaggaatgactttgaattcctctgtagatgggttccacaatacaactttttgc |
194 |
Q |
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| T |
40843695 |
aggaggaaaggctttgagaattgtacgttcaaaagagccactaggaatgactttgaattcctctgtatacggattccacaatactaatttttgc |
40843788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 4041759 - 4041871
Alignment:
| Q |
81 |
agatcttcaaaaacagtgccaggaggaaaggctttcagaattgcatgttcaaaagaaccatcaggaatgactttgaattcctctgtagatgggttccaca |
180 |
Q |
| |
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|||||||||||||||| ||||| ||||| ||||| ||||||| || ||||| || |||| ||||||| | |||||||| || |||||||| ||||||| |
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| T |
4041759 |
agatcttcaaaaacagatccagggggaaatgctttgagaattgtgtgctcaaaggagccattaggaatggccttgaattcatccgtagatggattccaca |
4041858 |
T |
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| Q |
181 |
atacaactttttg |
193 |
Q |
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||||||||||||| |
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| T |
4041859 |
atacaactttttg |
4041871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 7453502 - 7453454
Alignment:
| Q |
143 |
aggaatgactttgaattcctctgtagatgggttccacaatacaactttt |
191 |
Q |
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||||||||| || |||||||| ||| |||||||||||||||||||||| |
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| T |
7453502 |
aggaatgacctttaattcctcgatagctgggttccacaatacaactttt |
7453454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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