View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0365_2D_low_2 (Length: 620)

Name: NF0365_2D_low_2
Description: NF0365_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0365_2D_low_2
NF0365_2D_low_2
[»] chr4 (2 HSPs)
chr4 (227-602)||(19172966-19173342)
chr4 (1-226)||(19173373-19173596)
[»] chr2 (1 HSPs)
chr2 (1-75)||(25565009-25565083)
[»] chr8 (1 HSPs)
chr8 (277-335)||(19894690-19894745)
[»] chr1 (1 HSPs)
chr1 (277-335)||(542118-542173)
[»] chr7 (2 HSPs)
chr7 (277-315)||(13779724-13779762)
chr7 (16-56)||(46435461-46435501)
[»] chr6 (1 HSPs)
chr6 (277-335)||(24245839-24245894)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 227 - 602
Target Start/End: Complemental strand, 19173342 - 19172966
Alignment:
Q  227 ttgtaatgcttctatttcatactcagattttagtctgtttgctcagcccatcctcctactactcgaggtgaggtcatgtatcacatgaggagaaccattc 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19173342 ttgtaatgcttctatttcatactcagattttagtctgtttgctcagcccatcctcctactactcgaggtgaggtcatgtatcacatgaggagaaccattc 19173243  T
Q  327 tgatagtttttacagatgaagtttcgagcatcgaacaatagtgatcgatggcaaaacaactaatggaggttaaggacttccctgacataagggagaaatt 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19173242 tgatagtttttacagatgaagtttcgagcatcgaacaatagtgatcgatggcaaaacaactaatggaggttaaggacttccctgacataagggagaaatt 19173143  T
Q  427 gtcaaagaaaaatggttagattact-cattattcagtaaacaaacactaccttcagcacatcacatcgtctgcagtggtctctaatattctaacatgaaa 525  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  19173142 gtcaaagaaaaatggttagattactccattattcagtaaacaaacactaccttcagcacatcacatcatctgcagaggtctctaatattctaacatgaaa 19173043  T
Q  526 catttttaacaaataatcccatgattactcataattacttttcagtcttctgctgctactcataaaccatagtgatg 602  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  19173042 catttataacaaataatcccatgattactcataattacttttcaatcttctgcttctactcataaatcatagtgatg 19172966  T

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Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 19173596 - 19173373
Alignment:
Q  1 gtaagccccacaacacaaagtggcgaagaacaaatagaattttctacaaaagccggctaacggaggtattcctacgtatgaaaacatagtaatgcagacc 100  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  19173596 gtaagccccacaacaca--gtggcgaagaacaaatagaatttactacaaaagccggctaacggaggtattcctacgtatgagaacatagtaatacagacc 19173499  T
Q  101 gttatagccgaaataggattcagtctgcctctcttcgggaaggaggtcaagctgggcttctttaacctttagggagttcttctgctgatgaagttaggga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19173498 gttatagccgaaataggattcagtctgcctctcttcgggaaggaggtcaagctgggcttctttaacctttagggagttcttctgctgatgaagttaggga 19173399  T
Q  201 gctttgccagtctctctattgccctg 226  Q
    ||||||||||||||||||||||||||    
T  19173398 gctttgccagtctctctattgccctg 19173373  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25565009 - 25565083
Alignment:
Q  1 gtaagccccacaacacaaagtggcgaagaacaaatagaattttctacaaaagccggctaacggaggtattcctac 75  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  25565009 gtaagccccacaacccaaagcggcgaagaacaaatagaatttgctataaaagccggctaacgggggtattcctac 25565083  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 19894745 - 19894690
Alignment:
Q  277 tcctcctactactcgaggtgaggtcatgtatcacatgaggagaaccattctgatagttt 335  Q
    ||||||||||| |||||||||| |||||||||||||   |||||| |||||||||||||    
T  19894745 tcctcctactattcgaggtgagatcatgtatcacat---gagaactattctgatagttt 19894690  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 542118 - 542173
Alignment:
Q  277 tcctcctactactcgaggtgaggtcatgtatcacatgaggagaaccattctgatagttt 335  Q
    ||||||||||| |||||||||| |||||||||||||   |||||| |||||||||||||    
T  542118 tcctcctactattcgaggtgagatcatgtatcacat---gagaactattctgatagttt 542173  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 13779762 - 13779724
Alignment:
Q  277 tcctcctactactcgaggtgaggtcatgtatcacatgag 315  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  13779762 tcctcctactattcgaggtgagatcatgtatcacatgag 13779724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 46435461 - 46435501
Alignment:
Q  16 caaagtggcgaagaacaaatagaattttctacaaaagccgg 56  Q
    ||||| ||| ||||||||||||||||| |||||||||||||    
T  46435461 caaagcggcaaagaacaaatagaatttgctacaaaagccgg 46435501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 24245894 - 24245839
Alignment:
Q  277 tcctcctactactcgaggtgaggtcatgtatcacatgaggagaaccattctgatagttt 335  Q
    |||| |||||| |||||||||| |||||||||||||   |||||| |||||||||||||    
T  24245894 tccttctactattcgaggtgagatcatgtatcacat---gagaactattctgatagttt 24245839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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