View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0365_2D_low_21 (Length: 206)
Name: NF0365_2D_low_21
Description: NF0365_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365_2D_low_21 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 53880720 - 53880796
Alignment:
| Q |
130 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcgaaccaccatctccc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53880720 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcgaaccaccatctccc |
53880796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 53886834 - 53886910
Alignment:
| Q |
130 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcgaaccaccatctccc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53886834 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcgaaccaccatctccc |
53886910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 53880596 - 53880665
Alignment:
| Q |
9 |
ggacatcacacaaactacacttagaaaataagaagtcaccaaaaagaacaaatacaggttcaaccttgag |
78 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53880596 |
ggacataacacaaactacacttagaaaataagaagtcaccaaaaagaacaaatacaggttcaaccttgag |
53880665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 53886710 - 53886779
Alignment:
| Q |
9 |
ggacatcacacaaactacacttagaaaataagaagtcaccaaaaagaacaaatacaggttcaaccttgag |
78 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53886710 |
ggacataacacaaactacacttagaaaataagaagtcaccaaaaagaacaaataaaggttcaaccttgag |
53886779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1007 times since January 2019
Visitors: 3159