View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365_2D_low_4 (Length: 300)
Name: NF0365_2D_low_4
Description: NF0365_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365_2D_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 27719953 - 27720221
Alignment:
| Q |
19 |
tcctctaagcctttactatacccatgtattagttcaccacacattagaaatttcggaaacaccttactaagcattatcaactcttccataccctcacttt |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27719953 |
tcctctaagcctttactatacacatgtattagttcaccacacgttaggaatttcggaaacaccttactaagcattatcaactcttccataccctcacttc |
27720052 |
T |
|
| Q |
119 |
caaatttcatgtttcacatcatttttcatctttaacttttctctctttcgtatggaattacttaagttaattaatatgtctttaactctcaaacttcttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27720053 |
caaatttcatgtttcacatcatttttcatctttaacttttctctctttcgtatggaattacttaagttaattaatatgtctttaactctcaaactttttt |
27720152 |
T |
|
| Q |
219 |
ctattactttcctttccatcatcaccattgtttgtgctcaaaatgccgcgcaaactatcacttatgatg |
287 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27720153 |
ctattaccttattttccatcatcaccattgtttgtgctcaaaatgccgcgcaaactatcacttatgatg |
27720221 |
T |
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