View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0365_2D_low_6 (Length: 285)
Name: NF0365_2D_low_6
Description: NF0365_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0365_2D_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 28430423 - 28430694
Alignment:
| Q |
1 |
aggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaattactgtccaaaagtgattctcacatacggttccaag |
100 |
Q |
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| T |
28430423 |
aggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaattactgtccaaaagtgattctcacatacggttccaag |
28430522 |
T |
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| Q |
101 |
aatcttgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28430523 |
aatcttgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctg |
28430622 |
T |
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| Q |
201 |
cagctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacccaact |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28430623 |
cagctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacctaact |
28430694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 13379244 - 13378979
Alignment:
| Q |
2 |
ggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaattactgtccaaaagtgattctcacatacggttccaaga |
101 |
Q |
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| T |
13379244 |
ggtgtggggtgcatggttggatcctgccattcatgtcaaagttgtggcgaggatctcgaaaattattgctcaaagatgattcagacatacagttccaaga |
13379145 |
T |
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| Q |
102 |
atcttgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctgc |
201 |
Q |
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| T |
13379144 |
atgttgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattgtccgtattcccgatgccttatcacttgatgctgc |
13379045 |
T |
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| Q |
202 |
agctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacc |
267 |
Q |
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| T |
13379044 |
cgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacc |
13378979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 13373449 - 13373191
Alignment:
| Q |
1 |
aggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaattactgtccaaaagtgattctcacatacggttccaag |
100 |
Q |
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|||||| |||||||||||| ||||||||||||||| |||| ||| || |||||| ||||| || |||| |||| |||||||| || ||||| |
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| T |
13373449 |
aggtgtagggtgcatggttggatcctgccactcatgtcaaagttgtggtgatgatctcgagaattattgctcaaagatgatcctcacatatggcgccaag |
13373350 |
T |
|
| Q |
101 |
aatcttgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctg |
200 |
Q |
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| T |
13373349 |
aatattgatggaacaatcacatatggaggctactctgataccatggttgcccacgaacacttcgtgatccgtattcctgatgccttaccacttgatgccg |
13373250 |
T |
|
| Q |
201 |
cagctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggactt |
259 |
Q |
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| T |
13373249 |
ctgctcctcttctttgtgcggggatcacagtatatagccctttgaaatattttggactt |
13373191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 13419602 - 13419471
Alignment:
| Q |
106 |
tgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctgcagct |
205 |
Q |
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|||||||||| ||||||||||||| ||||||||| ||||||| | ||||| ||||||||| ||||||| ||||| |||||||||||||||| | | |
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| T |
13419602 |
tgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgctgccggt |
13419503 |
T |
|
| Q |
206 |
cctctcctctgcgccgggatcacggtgtatag |
237 |
Q |
| |
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||||| || ||||| || ||||| |||||||| |
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| T |
13419502 |
cctcttctttgcgctggaatcacagtgtatag |
13419471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 13447153 - 13447022
Alignment:
| Q |
106 |
tgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctgcagct |
205 |
Q |
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||||||||| ||||| |||||||| | ||||||| ||||||| | ||||| ||||||||| ||||||| ||||| |||||||||||| ||| | | |
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| T |
13447153 |
tgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
13447054 |
T |
|
| Q |
206 |
cctctcctctgcgccgggatcacggtgtatag |
237 |
Q |
| |
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||||| || ||||| || |||| |||||||| |
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| T |
13447053 |
cctcttctttgcgctggagtcacagtgtatag |
13447022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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