View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0367_high_10 (Length: 421)
Name: NF0367_high_10
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 30 - 419
Target Start/End: Complemental strand, 30256820 - 30256425
Alignment:
| Q |
30 |
catattttacaacattattgagaaaatattgtttaatattacatatctaaatgtgctttaaaatttaattatatttcatgcaaattgaactaaaacaaaa |
129 |
Q |
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| T |
30256820 |
catattttacaacattattgagaaaatattgtttaatattacatatctaaatgtgctttaaaatttaattatatttcatgcaaattgaactaaaacaaaa |
30256721 |
T |
|
| Q |
130 |
tcgattaggttttttgaacatattaattattttaaagatcatgctaacttataccttaaatatataagttaaagtgttaaaaaagaaattaaaatatgag |
229 |
Q |
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| T |
30256720 |
tcgataaggttttttgaacatattaattattttaaagatcatgctaacttataccttaaatatataagttaaagcgttaaaaaagaaattaaaatatgag |
30256621 |
T |
|
| Q |
230 |
ttatgtattagaagaataaattttcaaaacaatatttctatacttagttttttaaattatgctataatagca-----tagcatttctcttgttttaaatg |
324 |
Q |
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| T |
30256620 |
ttatgtattagaagaataaattttcaaaacaatatttctatacttagttttttaaattatgctataataacatatgttagcatttctcttattttaaata |
30256521 |
T |
|
| Q |
325 |
tgttatgttaaagtg-aaggtattattttacaaagaaaagtgctagtattagatcaaaatctgtttaatagggacttgattttgattgataaaaaa |
419 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30256520 |
tgttatgttaaagtgcaagtaattattttacaaagaaaagtgctagtattagatcaaaatctgtttaatagggacttgattttgattgacaaaaaa |
30256425 |
T |
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