View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0367_high_16 (Length: 328)
Name: NF0367_high_16
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_high_16 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 3036372 - 3036174
Alignment:
| Q |
30 |
attagcaatagaaagcgttcttgcgaagtattcatcaatagtttcactttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036372 |
attagcaatagaaagcgttcttgcgaagtattcatcaatagtttcattttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaa |
3036273 |
T |
|
| Q |
130 |
cgtttcacattggtagaaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctat |
228 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036272 |
cgtttcacattggtaaaaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctat |
3036174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 3035414 - 3035311
Alignment:
| Q |
225 |
ctatgaatggattgaaagagataattcttcactttaagatcacacagcttaccatccttcgcaactttctcttgttctggtgttggattctcaagagcat |
324 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3035414 |
ctatcaatggattggaagagataattcttcactttaagatcacacagcttactatccttcgcaactttctcttgttctggtgttggattctctggagcat |
3035315 |
T |
|
| Q |
325 |
tgat |
328 |
Q |
| |
|
|||| |
|
|
| T |
3035314 |
tgat |
3035311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 34 - 323
Target Start/End: Complemental strand, 16863115 - 16862828
Alignment:
| Q |
34 |
gcaatagaaagcgttcttgcgaagtattcatcaatagtttcactttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaacgtt |
133 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| || ||||| |||||||||| || || |
|
|
| T |
16863115 |
gcaatagaaagagttattgcgaagtatttatcaatagtttcaccttccttcattgcaagaatctcaaattctttacgcaaagcttgcaattgagcacatt |
16863016 |
T |
|
| Q |
134 |
tcacattggtagaaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctatgaatg |
233 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
16863015 |
tcactttggcggaaccttgatacttcctacgcattgcatcccaaatatcct--tagctgaatctttaaccaatctagtttccatgattgttctatcaatg |
16862918 |
T |
|
| Q |
234 |
gattgaaagagataattcttcactttaagatcacacagcttaccatccttcgcaactttctcttgttctggtgttggattctcaagagca |
323 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||| || |||| |||||| ||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
16862917 |
gattgaaagagatagtttttcaccttaagatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagca |
16862828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 8441362 - 8441255
Alignment:
| Q |
50 |
ttgcgaagtattcatcaatagtttcactttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaacgtttcac---attggtaga |
146 |
Q |
| |
|
|||| ||||||||||||| | ||||| |||| |||| | ||||| |||||||||||||||||||| ||||||| | |||||| || ||| ||||| |
|
|
| T |
8441362 |
ttgcaaagtattcatcaactgcttcacattccctcattgtaagaacttcaaattctttgcgtaaagctagcaattgtgcacgtttgacctaattagtaga |
8441263 |
T |
|
| Q |
147 |
accttgat |
154 |
Q |
| |
|
|||||||| |
|
|
| T |
8441262 |
accttgat |
8441255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 328
Target Start/End: Complemental strand, 20528738 - 20528449
Alignment:
| Q |
35 |
caatagaaagcgttcttgcgaagtattcatcaatagtttcactttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaacgttt |
134 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||| | ||| | ||| |||||||||||||||||||||| |||| |||| || |||||||||| |||||| |
|
|
| T |
20528738 |
caatagaaagtgttattgcaaagtattcatcaatggattcgccttctttcatagcaagaatctcaaattatttgtgtaatgcttgcaattgagcacgttt |
20528639 |
T |
|
| Q |
135 |
cacattggtagaaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctatgaatgg |
234 |
Q |
| |
|
|| || |||||| | ||||| ||||||| |||||||||||||||||||| ||| ||||||||| | |||| | ||||| || |||||||| ||||| |
|
|
| T |
20528638 |
gacctttgtagaatcatgatacttcctacgcattgcatcccaaatatcct--tagctgaatctttgatcaagtttctttccttgattgttctatcaatgg |
20528541 |
T |
|
| Q |
235 |
attgaaagagataattcttcactttaagatcacacagcttaccatccttcgcaactttctcttgttctggtgttggattctcaagagcattgat |
328 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
20528540 |
at--gaagagatagttcttcaccttaagatcacaaagcttactatccttcgcaactttctcttgttctggagttggattttcaggagcattgat |
20528449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 47 - 323
Target Start/End: Complemental strand, 17535563 - 17535289
Alignment:
| Q |
47 |
ttcttgcgaagtattcatcaatagtttcactttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaacgtttcacattggtaga |
146 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||||| |||||||||| |||||| ||||||||||| || |||| || | ||||||| |||||||| |
|
|
| T |
17535563 |
ttcttgtgaagtattcatcaatggtttcactctccttcattgcaagaatcttaaattccttgcgtaaagcttgtaattcagcatgtttcactttggtaga |
17535464 |
T |
|
| Q |
147 |
accttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctatgaatggattgaaagagat |
246 |
Q |
| |
|
||||||||| || |||| |||||| ||||||||||||| ||| |||||||||||| || | ||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
17535463 |
accttgatactttctacgcattgcctcccaaatatcct--tagatgaatctttaactaaaatggtttccatgattgttctatcgatggattgaaaaagat |
17535366 |
T |
|
| Q |
247 |
aattcttcactttaagatcacacagcttaccatccttcgcaactttctcttgttctggtgttggattctcaagagca |
323 |
Q |
| |
|
| ||||| || ||||||||| || |||| || || ||||| || ||||| ||| |||||||||||||| ||||| |
|
|
| T |
17535365 |
agttctttaccttaagatcaagtagtttactgtcttttgcaaccttttcttgctctagtgttggattctcaggagca |
17535289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 304
Target Start/End: Complemental strand, 28106849 - 28106645
Alignment:
| Q |
98 |
caaattctttgcgtaaagcatgcaattgagaacgtttcacattggtagaaccttgatatttcctacacattgcatcccaaatatccttatagttgaatct |
197 |
Q |
| |
|
||||||||||| | || || ||||| |||| |||||||||||| | ||||||||||| ||||||| ||| ||||||| |||||| || | ||||| | |
|
|
| T |
28106849 |
caaattctttgtgcaatgcttgcaactgagcacgtttcacatttgcagaaccttgatgcttcctacgcatagcatcccgaatatcattg--gctgaattt |
28106752 |
T |
|
| Q |
198 |
ttaaccaagaatgtttccatggctgttctatgaatggattgaaagagataattcttcactttaagatcacacagcttaccatccttcgcaactttctctt |
297 |
Q |
| |
|
|| ||||| | | || ||||| |||||||| ||||||||||||||| || ||||| |||||||||||||| ||||||| ||| || ||| ||||||||| |
|
|
| T |
28106751 |
ttgaccaatattattaccatgattgttctatcaatggattgaaagaggtagttctttactttaagatcacatagcttactatcttttgcagctttctctt |
28106652 |
T |
|
| Q |
298 |
gttctgg |
304 |
Q |
| |
|
||||||| |
|
|
| T |
28106651 |
gttctgg |
28106645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 29945291 - 29945421
Alignment:
| Q |
31 |
ttagcaatagaaagcgttcttgcgaagtattcatcaatagtttcactttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaac |
130 |
Q |
| |
|
|||||||| | ||| ||||||| || |||||||| | ||||||| ||| ||||||||||||| |||||||||| | ||||||| | |||||||| || |
|
|
| T |
29945291 |
ttagcaattgcaagagttcttgagatgtattcattcactgtttcaccttctttcatagcaagaacctcaaattctctacgtaaagttttcaattgagcac |
29945390 |
T |
|
| Q |
131 |
gtttcacattggtagaaccttgatatttcct |
161 |
Q |
| |
|
|||| || || || || |||||||| ||||| |
|
|
| T |
29945391 |
gttttacctttgttgagccttgatacttcct |
29945421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 34 - 323
Target Start/End: Original strand, 40613255 - 40613542
Alignment:
| Q |
34 |
gcaatagaaagcgttcttgcgaagtattcatcaatagtttcactttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaacgtt |
133 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| || ||||||| ||| ||||| |||||||||||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
40613255 |
gcaatagagagagttcttgcgaagtaatcatctatggtttcaccttctttcatttcaagaatctcaaattccttgcgtaaagcttgcaattgagcacgtt |
40613354 |
T |
|
| Q |
134 |
tcacattggtagaaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctatgaatg |
233 |
Q |
| |
|
|||| ||||||||||||||||| || || | ||| |||||||||||||||| | | |||||||||||||| | ||||| ||| | |||||| |||| |
|
|
| T |
40613355 |
tcaccttggtagaaccttgatactttctgcgcatggcatcccaaatatcct--ttgctgaatctttaaccataatggtttctatgatttttctatcaatg |
40613452 |
T |
|
| Q |
234 |
gattgaaagagataattcttcactttaagatcacacagcttaccatccttcgcaactttctcttgttctggtgttggattctcaagagca |
323 |
Q |
| |
|
|||||||| ||||| || || || || |||||| || |||| |||||| |||| || |||||||||||||||||||| ||| ||||| |
|
|
| T |
40613453 |
gattgaaaaagatagttttttacctttagatcaagaagtttactatcctttgcaaaattttcttgttctggtgttggattttcaggagca |
40613542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 34 - 323
Target Start/End: Complemental strand, 20542067 - 20541779
Alignment:
| Q |
34 |
gcaatagaaagcgttcttgcgaagtattcatcaatagtttcactttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaacgtt |
133 |
Q |
| |
|
|||||||| || ||||||| |||||| || || || ||||||| ||| ||||| ||||||||||||||||| |||||||||| |||||||||| || || |
|
|
| T |
20542067 |
gcaatagagagagttcttgtgaagtaatcgtctatggtttcaccttctttcattgcaagaatctcaaattccttgcgtaaagattgcaattgagcacatt |
20541968 |
T |
|
| Q |
134 |
tcacattggtagaaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaat-gtttccatggctgttctatgaat |
232 |
Q |
| |
|
|||| || |||||||||||||| || |||| ||| |||||||||||||||| | ||||||||||||||| ||||| ||||||||| | |||||| ||| |
|
|
| T |
20541967 |
tcaccttcgtagaaccttgatactttctacgcatagcatcccaaatatcct--ttgttgaatctttaacc-agaatggtttccatgatttttctatcaat |
20541871 |
T |
|
| Q |
233 |
ggattgaaagagata-attcttcactttaagatcacacagcttaccatccttcgcaactttctcttgttctggtgttggattctcaagagca |
323 |
Q |
| |
|
||||||||| ||||| || || || || |||||| || |||| |||||| ||| |||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
20541870 |
ggattgaaaaagatagtttttttacctttagatcaagaagtttactatcctttgcagctttttcttgttctggtgttggattttcaggagca |
20541779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 259
Target Start/End: Original strand, 6582557 - 6582585
Alignment:
| Q |
231 |
atggattgaaagagataattcttcacttt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6582557 |
atggattgaaagagataattcttcacttt |
6582585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 10784461 - 10784553
Alignment:
| Q |
69 |
agtttcactttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaacgtttcacattggtagaaccttgatatttcct |
161 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| | ||||||| |||||||||| |||||| || || || ||||||||||| ||||| |
|
|
| T |
10784461 |
agtttcaccttctttcatagcaagaatctcaaattctctacgtaaagtttgcaattgagcacgttttacctttgttgaaccttgatacttcct |
10784553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1607 times since January 2019
Visitors: 3090