View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0367_low_1 (Length: 806)

Name: NF0367_low_1
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0367_low_1
NF0367_low_1
[»] chr1 (8 HSPs)
chr1 (62-616)||(1224144-1224697)
chr1 (249-432)||(1201379-1201563)
chr1 (633-798)||(1223992-1224157)
chr1 (634-793)||(1201676-1201848)
chr1 (490-615)||(1201562-1201687)
chr1 (112-197)||(7218081-7218166)
chr1 (112-166)||(7262525-7262579)
chr1 (112-193)||(45975672-45975753)
[»] chr7 (3 HSPs)
chr7 (114-188)||(4966143-4966217)
chr7 (112-188)||(38010701-38010777)
chr7 (113-188)||(27378836-27378911)
[»] chr3 (1 HSPs)
chr3 (115-197)||(41452501-41452583)
[»] chr5 (2 HSPs)
chr5 (112-172)||(17258890-17258950)
chr5 (141-197)||(18286769-18286825)
[»] chr2 (2 HSPs)
chr2 (112-188)||(22681192-22681268)
chr2 (112-187)||(3235391-3235466)
[»] chr6 (1 HSPs)
chr6 (112-189)||(21024197-21024274)


Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 62 - 616
Target Start/End: Complemental strand, 1224697 - 1224144
Alignment:
Q  62 attgacatacgcacttttgagcctgttagaaagagcttaaggaaacaactttcataagctgttttcaatttctttccacaagttcttcaggatagtatat 161  Q
    |||||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||    
T  1224697 attgacatacgcacttatgagcctgtttggaagagcttatggaaacaactttcataagctgttttcagtttctttccacaagttcttcagggtagtgtat 1224598  T
Q  162 gaaaacagcttgtagctaatatgaaaatattttgacnnnnnnnatctcctattatagaaataacttatatataagcacttttacgatataaatcttgctt 261  Q
    |||||||||||||||||||||||||||||||  |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1224597 gaaaacagcttgtagctaatatgaaaatatt--gactttttttatctcctattatagaaataacttatatataagcacttttacgatataaatcttgctt 1224500  T
Q  262 ctgcatttaaaaatgcaggaactagcttccttgtatacatgtatgctaatgagttgagagatttcatgtgcaggacatgaggatgacatggtgatagaac 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1224499 ctgcatttaaaaatgcaggaactagcttccttgtatacatgtatgctaatgagttgagagatttcatgtgcaggacatgaggatgacatggtgatagaac 1224400  T
Q  362 ttgccaatga-gtgaggaaggtactttcagtttcgggaaatgtacatcctaatgacaagaagttgtttggaagacttaaggctttactcaacatcctcca 460  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1224399 ttgccaatgaagtgaggaaggtactttcagtttcgggaaatgtacatcctaatgacaagaagttgtttggaagacttaaggctttactcaacatcctcca 1224300  T
Q  461 ttaacactgcaaaaacagatgtgtaatccaaagatcacacaatgaacttttccatgagcaattgaatgccatttcatttgttgcgcatatgcatgacaag 560  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  1224299 ttaaaactgcaaaaacagatgtgtaatccaaagatcacacaatgaccttttccatgagcaattgaatgccatttcattcgttgtgcatacgcatgacaag 1224200  T
Q  561 ccaattgactgctacacctaggcacatcatcggacaagattttgtacctcagtttc 616  Q
    |||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1224199 ccagctgactgctacacctaggcacatcatcggacaatattttgtacctcagtttc 1224144  T

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Target: chr1; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 249 - 432
Target Start/End: Original strand, 1201379 - 1201563
Alignment:
Q  249 ataaatcttgcttctgcatttaaaaatgcaggaactagcttccttgtatacatgtatgctaatgagttgagagatttcatgtgcaggacatgaggatgac 348  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1201379 ataaatcttgcttctacatttaaaaatgcaggaactagcttccttgtatacatgtatgctaatgagttgagagatttcatgtgcaggacatgaggatgac 1201478  T
Q  349 atggtgatagaacttgccaatg-agtgaggaaggtactttcagtttcgggaaatgtacatcctaatgacaagaagttgtttggaa 432  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||    
T  1201479 atggtgatagaacttgccaatgaagtgaggaaggtactttcagttttgtgaaatgtacatcctaatgacaagaagttggttggaa 1201563  T

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Target: chr1; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 633 - 798
Target Start/End: Complemental strand, 1224157 - 1223992
Alignment:
Q  633 tgtacctcagtttctgaactcaaaacagttgcatcaacaactatttgagtttaagggagatgttaaaatgaaactaacttgtaatgtgcttgatcaaaat 732  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1224157 tgtacctcagtttccgaactcaaaacagttgcatcaacaactatttgagtttaagggagatgttaaaatgaaactaacttgtaatgtgcttgatcaaaat 1224058  T
Q  733 catttctaattattttgtaaatagaacggtgaaatgcatgtatttctcttttccattgttcatctc 798  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  1224057 catttctaattattttgtaaatagaacagtgaaatacatgtatttctcttttccattgttcttctc 1223992  T

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Target: chr1; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 634 - 793
Target Start/End: Original strand, 1201676 - 1201848
Alignment:
Q  634 gtacctcagtttctgaactcaaaacagttgcatcaacaactatttgagtttaagggagatgttaaaatgaaactaacttgtaatgtgcttg--------- 724  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||             
T  1201676 gtacctcagttttcgaactcaaaacagttgcatctacaactatttgagtttaagggagatgttaaaatgaaattaacttgtaatgtgcttgatcatcgat 1201775  T
Q  725 atcaaaatcatttctaattattttgtaaatagaac----ggtgaaatgcatgtatttctcttttccattgttc 793  Q
    ||||||||||| |||||||| |||| |||||||||      |||||| | |||||||||||||||||||||||    
T  1201776 atcaaaatcatctctaattaatttgaaaatagaacaatgaatgaaatacgtgtatttctcttttccattgttc 1201848  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 490 - 615
Target Start/End: Original strand, 1201562 - 1201687
Alignment:
Q  490 aaagatcacacaatgaacttttccatgagcaattgaatgccatttcatttgttgcgcatatgcatgacaagccaattgactgctacacctaggcacatca 589  Q
    |||||||| | |||||  ||||||||||| |||||||| |  ||||||||||||| |||| | |||||||||||  |||||||| |||| | ||||||||    
T  1201562 aaagatcagagaatgacgttttccatgagaaattgaatactgtttcatttgttgcacatacgaatgacaagccagctgactgctgcaccaaagcacatca 1201661  T
Q  590 tcggacaagattttgtacctcagttt 615  Q
    ||||||||||||| ||||||||||||    
T  1201662 tcggacaagatttcgtacctcagttt 1201687  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 7218081 - 7218166
Alignment:
Q  112 ttcataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaaatattttgac 197  Q
    |||| ||||||||||||| || ||| || ||||||| ||||||||  |||||||||| ||| ||||| ||||||||| | ||||||    
T  7218081 ttcacaagctgttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgac 7218166  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 7262525 - 7262579
Alignment:
Q  112 ttcataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaa 166  Q
    |||||||||||||||||  || |||||||||| ||||||||||||  ||||||||    
T  7262525 ttcataagctgttttcaccttatttccacaagctcttcaggatagcttatgaaaa 7262579  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 45975753 - 45975672
Alignment:
Q  112 ttcataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaaatattt 193  Q
    |||||||||||||||||  || ||| || || |||| || |||||  |||||||||||||||||||| |||  |||||||||    
T  45975753 ttcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaacagcttgtagcttatacaaaaatattt 45975672  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 4966217 - 4966143
Alignment:
Q  114 cataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaaa 188  Q
    |||||| |||||||| ||| |||||| ||| |||||||||| |  |||||||||||||| || ||||||||||||    
T  4966217 cataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaacagcttatacctaatatgaaaa 4966143  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 38010777 - 38010701
Alignment:
Q  112 ttcataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaaa 188  Q
    ||||||||||||||| |  || |||||| |||||||  |||||||  |||||||||||||| ||||| |||||||||    
T  38010777 ttcataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaa 38010701  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 27378836 - 27378911
Alignment:
Q  113 tcataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaaa 188  Q
    ||||||| |||||||| ||| ||| || ||| ||| ||||||||| ||||||||||| |||||| | |||||||||    
T  27378836 tcataagttgttttcagtttattttcataagctctccaggatagtttatgaaaacagattgtagtttatatgaaaa 27378911  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 41452583 - 41452501
Alignment:
Q  115 ataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaaatattttgac 197  Q
    ||||||||||||||  || ||||||||| |||| ||||||||  ||||||||||||||  | |||||||||||| | ||||||    
T  41452583 ataagctgttttcaccttatttccacaacttctccaggatagcttatgaaaacagcttacaactaatatgaaaacagtttgac 41452501  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 17258890 - 17258950
Alignment:
Q  112 ttcataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagctt 172  Q
    |||||||||||||||||  || ||| || ||| ||||||||||||| ||||||||||||||    
T  17258890 ttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagctt 17258950  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 18286825 - 18286769
Alignment:
Q  141 aagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaaatattttgac 197  Q
    ||||| || |||||||| |||||||||||||| |||||||||||||| | |||||||    
T  18286825 aagttgtttaggatagtttatgaaaacagcttatagctaatatgaaacttttttgac 18286769  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 22681192 - 22681268
Alignment:
Q  112 ttcataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaaa 188  Q
    ||||||||||||||| |  || |||||| |||||||  |||||||  |||||||||||||| ||||| |||||||||    
T  22681192 ttcataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaa 22681268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 3235391 - 3235466
Alignment:
Q  112 ttcataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaa 187  Q
    |||||||||||||||||  || |||||| ||  | |||| ||||||||||||||||||||| ||| | ||||||||    
T  3235391 ttcataagctgttttcagcttatttccataaacttttcaagatagtatatgaaaacagcttatagtttatatgaaa 3235466  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 21024274 - 21024197
Alignment:
Q  112 ttcataagctgttttcaatttctttccacaagttcttcaggatagtatatgaaaacagcttgtagctaatatgaaaat 189  Q
    |||||| | ||||||||| || ||| || |||||||  ||||||||||||||||| ||||| | ||| ||||||||||    
T  21024274 ttcatatgttgttttcaacttattttcataagttctcgaggatagtatatgaaaatagcttattgcttatatgaaaat 21024197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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