View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0367_low_13 (Length: 403)
Name: NF0367_low_13
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 388
Target Start/End: Original strand, 38741313 - 38741667
Alignment:
| Q |
30 |
ctagaaatacctgcaattttattttttataagtaaatcatatagaataactaagcataggaaaaattccagatttgtttgagtaaggcatatttggttgc |
129 |
Q |
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| T |
38741313 |
ctagaaatacctgcaattttattttttataagtaaatcatatagaataactaagcataggaaaaattccagatttgtttgagtaaggc--atctggttgc |
38741410 |
T |
|
| Q |
130 |
cttgagttaaattttcctaagaaattaaaatatctattttttcttgccatctcaataactattccatcattatcaatgatattatgtgcttaaatcagtc |
229 |
Q |
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| T |
38741411 |
cttgagttaaattttcctaagaaatt-aaatatctattttttcttgccatctcaataactattccatcattatcaatgatattatgtgcttaaatcagtc |
38741509 |
T |
|
| Q |
230 |
atgtacttgtaataaatnnnnnnnntcagtcatgtactcattaccnnnnnnnnnttgtgccccaaaaatcccattggtttattaattgtacatttcatgt |
329 |
Q |
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| T |
38741510 |
atgtacttgtaataaa-ataaaaaatcagtcatgtactcattaccaaaaaaaaattgtgccccaaaaatcccattggtttattaattgtacatttcatgt |
38741608 |
T |
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| Q |
330 |
tgcacatagatgtaaacaagtatatactatgaaaacacacgaaaagtgacttttctaag |
388 |
Q |
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| T |
38741609 |
tgcacataaatgtaaacaagtatatactatgaaaacacacgaaaagtgacttttttaag |
38741667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 51006343 - 51006178
Alignment:
| Q |
30 |
ctagaaatacctgcaattttattttttataagtaaatcatatagaataactaagcataggaaaaattccagatttgtttgagtaaggcatat-ttggttg |
128 |
Q |
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|||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| | | | |||| |
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| T |
51006343 |
ctagaaatacctgcaattttcttttttataagtaaattacatagaataattaagcataggaaaaattccaaatttgtttgagtaaggcgtctggttgttg |
51006244 |
T |
|
| Q |
129 |
ccttgagttaaattttcctaagaaattaaaatatctattttttcttgccatctcaataactattccat |
196 |
Q |
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||||||||||||||||| ||||||||| |||||| || ||||||| || |||| ||||||||||||| |
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| T |
51006243 |
ccttgagttaaattttcttaagaaatt-aaatattta-tttttctcgctatctatataactattccat |
51006178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 387
Target Start/End: Complemental strand, 51006085 - 51005993
Alignment:
| Q |
299 |
cccattggtttattaattgtacatttcatgttgcacatagatgtaaacaag------tatatactatgaaaacacacgaaaagtgacttttctaa |
387 |
Q |
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||||||||||||||||||||||||||||||||| |||||| | ||||||| |||| |||||||||||| |||||||||||||||||| |
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| T |
51006085 |
cccattggtttattaattgtacatttcatgttg--catagacgcaaacaagccaagaagtatattatgaaaacacatgaaaagtgacttttctaa |
51005993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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