View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0367_low_16 (Length: 364)
Name: NF0367_low_16
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 27560087 - 27560414
Alignment:
| Q |
8 |
aaacaaaggaaaagaaaaacattgcaatcaaattcatttcagtccgagacatgctctaagacttagaaggtaaaatataagtgacactcaattaaattta |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27560087 |
aaacaaaggaaaagaaaaacattgcaatcaaattcgtttcagtccgagacatgctctaagatttagaaggtaaaatataagtgacactcaattaaattta |
27560186 |
T |
|
| Q |
108 |
atctcaaatgaggaaaatgtatttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgcttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560187 |
atctcaaatgaggaaaatgtatttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgcttt |
27560286 |
T |
|
| Q |
208 |
tgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgct |
307 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560287 |
tgaagactttatttccaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgct |
27560386 |
T |
|
| Q |
308 |
taaaaagtatgtatagtattaattcaag |
335 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
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| T |
27560387 |
taaaaagtatgtatggtattaattcaag |
27560414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 193 - 317
Target Start/End: Original strand, 36667764 - 36667888
Alignment:
| Q |
193 |
acttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
292 |
Q |
| |
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|||||||| ||||||||| |||||||||| | || |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36667764 |
acttaccattgcttttgacgactttatttccgaatcctgctcagcacatttgtttgcaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
36667863 |
T |
|
| Q |
293 |
ataaaccttaatgcttaaaaagtat |
317 |
Q |
| |
|
||||||||||||||||||| ||||| |
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|
| T |
36667864 |
ataaaccttaatgcttaaatagtat |
36667888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 36667649 - 36667728
Alignment:
| Q |
9 |
aacaaaggaaaagaaaaacattgcaatcaaat-tcatttcagtccgagacatgctctaagacttagaaggtaaaatataag |
88 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||| |||| |||||||||||||| | ||||||||||||||||||| |
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| T |
36667649 |
aacaaaggaaaagaaaaacaatgcaatcaaatctgattt-agtcagagacatgctctaaaatttagaaggtaaaatataag |
36667728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 167 - 335
Target Start/End: Complemental strand, 24203628 - 24203459
Alignment:
| Q |
167 |
acagataaagaaaaacaccaaggta-gacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcg |
265 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| |||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||| |||||| |
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| T |
24203628 |
acagataaagaaaaacacaaaggtaagacttaccaatgtttttgaagtcttcattcccaaaacctgttcagcacatttatttgcaaggctcttcagttcg |
24203529 |
T |
|
| Q |
266 |
cttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaag |
335 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
24203528 |
cttgtccgcttcaaaacaaaggaaccaataaaccttaatgcttaaaaagtatgtatggtataaattcaag |
24203459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 30870622 - 30870681
Alignment:
| Q |
258 |
tgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgt |
319 |
Q |
| |
|
|||||| | |||||||||||||||| |||| ||||||||| |||||||| |||||||||||| |
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|
| T |
30870622 |
tgagtttgattgtctgcttcaaaac-aagggatcaataaatcttaatgc-taaaaagtatgt |
30870681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 184 - 335
Target Start/End: Original strand, 29409684 - 29409835
Alignment:
| Q |
184 |
ccaaggtagacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaaca |
283 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |
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| T |
29409684 |
ccaaagtagactcaccaatgcttttgaagacttcatttccaaaacctgttcagcacatttgtttgcaaagctcttgagttcgcttgtctgcttcaaaaca |
29409783 |
T |
|
| Q |
284 |
aaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaag |
335 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||| || |||||| |
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|
| T |
29409784 |
aaggacataacgaaccttaatgcttaaaaagtatgtatggtactagttcaag |
29409835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 29409488 - 29409614
Alignment:
| Q |
8 |
aaacaaaggaaaagaaaaacattgcaatcaaat------tcatttcagtccgagacatgctctaagacttagaaggta---aaatataagtgacactcaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||| |||| ||||||||||||||| |||||||||| ||||| ||||||||||||| |
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| T |
29409488 |
aaacaaaggaaaagaaaaacattgcaatcaattcaaatctgattt-agtcacagacatgctctaagatttagaaggtactaaaatacaagtgacactcaa |
29409586 |
T |
|
| Q |
99 |
ttaaatttaatctcaaatgaggaaaatg |
126 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
29409587 |
ttaaatttaatctcaaatgaggaaaatg |
29409614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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