View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0367_low_2 (Length: 690)
Name: NF0367_low_2
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_low_2 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 13 - 584
Target Start/End: Complemental strand, 8412891 - 8412329
Alignment:
| Q |
13 |
aatatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcat |
112 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412891 |
aatatttctcatgatgaattttagatacgaacataattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcat |
8412792 |
T |
|
| Q |
113 |
gaatcatttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaattttagttattac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412791 |
gaatcatttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaattttagttatta- |
8412693 |
T |
|
| Q |
213 |
tatttgtcattgatacttgtctcaccaaattcacaacaattttcttagttatacgaatttaatatttaaaagta----catcgataatggtaatgcttca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
8412692 |
------tcattgatacttgtctcaccaaattcacaacaattttcttaattatacgaatttaatatttaaaagtaagtacatcgataatggtagtgcttca |
8412599 |
T |
|
| Q |
309 |
tatatttagcaccatattaaataactaggtacctccattatggaggaaagaagttgagtccttacaaatgtccccgttcacttcactttttgcggtttgt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8412598 |
tatatttagcaccatattaaataactaggtacctccattatggaggaaagaagttgagtccttacaaatgtccccgttcactt-----tttgcggtttgt |
8412504 |
T |
|
| Q |
409 |
attatatatgttatttaataaatctcgcaatagcatagtcacaaactcacaataaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaag |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412503 |
attatatatgttatttaataaatctcgcaatagcatagtcacaaactcacagtaaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaag |
8412404 |
T |
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| Q |
509 |
ttgcctataaaagcaacgcatatatcgttgtggtgtattacttctctaatgagatgataggtgcatcagaacttat |
584 |
Q |
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| T |
8412403 |
ttgcctataaaagcaacgcatatatcgttgtagtgtattac-tctctaatgagatgataggtgcatcagaacttat |
8412329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 8351620 - 8351253
Alignment:
| Q |
13 |
aatatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcat |
112 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8351620 |
aatatttctcatgatgaattttagataggaacattattagaaaaagattgaagaatttgttcttattcttgcaaagaaatgatatgttactgaatcgcat |
8351521 |
T |
|
| Q |
113 |
gaatcatttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttgcttgggcgaattttagttattac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
8351520 |
gaatcatttttagcattcaaggtgcagcctaatttgtgaagccaaaagaatttctatatctgttattattattgttgcttgggccaattttagatattac |
8351421 |
T |
|
| Q |
213 |
tatttgtcattgatacttgtctcaccaaattcacaacaattttcttagttatacgaatttaatatttaa----aagtacatcgataatggtaatgcttca |
308 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
8351420 |
tagttgtcattcatacttgtctcaccaaattcacaacaatttttttaattatacaaatttaatatttaaaaataagtacatcgataatggtagtgcttca |
8351321 |
T |
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| Q |
309 |
tatatttagcaccatattaaataactaggtacctccattatggaggaaagaagttgagtccttacaaa |
376 |
Q |
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|||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8351320 |
tatatttaacactatattaaataactagatacctccattatggaggaaagaagttgagtccttacaaa |
8351253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 455 - 590
Target Start/End: Complemental strand, 8351179 - 8351042
Alignment:
| Q |
455 |
tcacaataaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcat-atatcgttgtggtgtattacttct |
553 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||| ||||| |
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| T |
8351179 |
tcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgatatcgttgtagtgtatttcttct |
8351080 |
T |
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| Q |
554 |
ctaatgagatgataggtgcatcag-aacttatcagcaa |
590 |
Q |
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| T |
8351079 |
ctaatgagttgataggcgaatgagaaacttatcagcaa |
8351042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 8356807 - 8356680
Alignment:
| Q |
15 |
tatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatga |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||| |
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| T |
8356807 |
tatttctcatgatgaattttagatcggaacatgattagaaaaagattgaagcatttgttcttatttctacaaggaaatgatatgttacttaatcgcatga |
8356708 |
T |
|
| Q |
115 |
atcatttttagcattcaaggtgcagcct |
142 |
Q |
| |
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||||||||||||||| | | |||||||| |
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| T |
8356707 |
atcatttttagcatttatgttgcagcct |
8356680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 236 - 377
Target Start/End: Complemental strand, 8452004 - 8451859
Alignment:
| Q |
236 |
accaaattcacaacaattttcttagttatacgaatttaatatttaaaagta----catcgataatggtaatgcttcatatatttagcaccatattaaata |
331 |
Q |
| |
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||||| ||| |||||||||||| | |||| ||||||||||||||||||||| | || | |||| |||||||| |||||||||||||||| |||||| |
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| T |
8452004 |
accaatttcgcaacaattttctcaattatgcgaatttaatatttaaaagtaagtacctccacaatgataatgctttgtatatttagcaccatactaaata |
8451905 |
T |
|
| Q |
332 |
actaggtacctccattatggaggaaagaagttgagtccttacaaat |
377 |
Q |
| |
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|| | ||||| |||||| ||||||||||||||||| | ||||||| |
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| T |
8451904 |
acgtgataccttcattattgaggaaagaagttgagtgcgtacaaat |
8451859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 8451785 - 8451736
Alignment:
| Q |
453 |
actcacaataaacaaaaagtcccacatcgaaaactttcaacaatagagag |
502 |
Q |
| |
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||||||| || ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
8451785 |
actcacagtagacaaaaagtcccacatcaaaaactttcaataatagagag |
8451736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 8365142 - 8365084
Alignment:
| Q |
15 |
tatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgtt |
73 |
Q |
| |
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|||||||||||| | ||||||||| || ||| ||||||| |||||||||||||||||| |
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|
| T |
8365142 |
tatttctcatgacggattttagattggatcatgattagaagaagattgaagcatttgtt |
8365084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 529
Target Start/End: Complemental strand, 8358903 - 8358843
Alignment:
| Q |
468 |
aaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcat |
529 |
Q |
| |
|
|||||||||||||||||| |||| |||||| | || |||||||| ||||||||||| ||||| |
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|
| T |
8358903 |
aaagtcccacatcgaaaa-tttctacaatataaagagtaagttggctataaaagcagcgcat |
8358843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 9022 - 8968
Alignment:
| Q |
88 |
gaaatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcct |
142 |
Q |
| |
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||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
9022 |
gaaatgatacgttacttaatggcatgaatcatttttagcattcaaggtgcagcct |
8968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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