View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0367_low_25 (Length: 316)

Name: NF0367_low_25
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0367_low_25
NF0367_low_25
[»] chr4 (18 HSPs)
chr4 (115-222)||(10184867-10184974)
chr4 (142-218)||(43189844-43189920)
chr4 (145-210)||(49495557-49495622)
chr4 (138-200)||(45577790-45577852)
chr4 (138-201)||(52673752-52673815)
chr4 (142-210)||(37695631-37695699)
chr4 (142-201)||(31445974-31446033)
chr4 (164-201)||(42034484-42034521)
chr4 (138-210)||(7555047-7555119)
chr4 (162-214)||(22318470-22318522)
chr4 (142-210)||(41720771-41720839)
chr4 (142-200)||(16320449-16320507)
chr4 (161-210)||(9435345-9435394)
chr4 (161-210)||(44324432-44324481)
chr4 (168-204)||(37859338-37859374)
chr4 (142-210)||(47642581-47642649)
chr4 (142-210)||(50178583-50178651)
chr4 (162-214)||(53200730-53200782)
[»] chr3 (15 HSPs)
chr3 (138-201)||(42547463-42547526)
chr3 (140-210)||(42035769-42035839)
chr3 (161-210)||(28625010-28625059)
chr3 (165-210)||(49107135-49107180)
chr3 (162-214)||(3867736-3867788)
chr3 (142-210)||(10747143-10747211)
chr3 (143-211)||(22484833-22484901)
chr3 (142-210)||(31883113-31883181)
chr3 (162-210)||(44000207-44000255)
chr3 (142-210)||(51925299-51925367)
chr3 (148-210)||(5442222-5442285)
chr3 (162-209)||(39079285-39079332)
chr3 (143-210)||(51813319-51813386)
chr3 (164-214)||(8067144-8067194)
chr3 (138-214)||(3964210-3964287)
[»] chr6 (12 HSPs)
chr6 (142-214)||(27824782-27824855)
chr6 (142-214)||(18597290-18597362)
chr6 (142-210)||(31870236-31870304)
chr6 (163-221)||(13412644-13412702)
chr6 (168-213)||(29203059-29203104)
chr6 (145-210)||(35004264-35004329)
chr6 (138-210)||(1004558-1004630)
chr6 (153-199)||(4064096-4064142)
chr6 (163-200)||(7396269-7396306)
chr6 (150-219)||(9200506-9200575)
chr6 (142-210)||(14808136-14808204)
chr6 (162-210)||(32614074-32614122)
[»] chr7 (16 HSPs)
chr7 (162-214)||(29455940-29455992)
chr7 (142-214)||(48445450-48445522)
chr7 (142-210)||(1363566-1363634)
chr7 (142-210)||(9913454-9913522)
chr7 (142-210)||(9927142-9927210)
chr7 (142-214)||(14608486-14608558)
chr7 (142-214)||(34295498-34295570)
chr7 (161-204)||(15035357-15035400)
chr7 (163-214)||(41903648-41903699)
chr7 (161-214)||(29372873-29372926)
chr7 (167-210)||(3359939-3359982)
chr7 (143-214)||(22724126-22724197)
chr7 (168-214)||(329425-329471)
chr7 (161-210)||(8083830-8083879)
chr7 (138-190)||(2048877-2048929)
chr7 (142-210)||(43368130-43368198)
[»] chr2 (6 HSPs)
chr2 (142-212)||(6896093-6896163)
chr2 (142-210)||(32766602-32766670)
chr2 (162-198)||(35170323-35170359)
chr2 (142-204)||(27462903-27462965)
chr2 (172-214)||(30712812-30712854)
chr2 (162-202)||(42202032-42202072)
[»] chr1 (20 HSPs)
chr1 (162-214)||(15540058-15540110)
chr1 (140-208)||(32785366-32785434)
chr1 (138-202)||(33937089-33937153)
chr1 (138-214)||(13994242-13994319)
chr1 (142-210)||(38663066-38663134)
chr1 (161-221)||(47093003-47093063)
chr1 (142-201)||(504572-504631)
chr1 (163-214)||(2761723-2761774)
chr1 (148-207)||(24173141-24173200)
chr1 (144-214)||(6144154-6144224)
chr1 (179-221)||(32467982-32468024)
chr1 (161-203)||(34283997-34284039)
chr1 (168-206)||(39739013-39739051)
chr1 (143-209)||(49799312-49799378)
chr1 (161-210)||(15324110-15324159)
chr1 (111-156)||(26894988-26895033)
chr1 (142-210)||(44738213-44738282)
chr1 (166-210)||(43678077-43678121)
chr1 (126-214)||(45658739-45658827)
chr1 (142-210)||(50304585-50304653)
[»] chr5 (4 HSPs)
chr5 (147-214)||(31644376-31644443)
chr5 (142-207)||(42013441-42013506)
chr5 (142-210)||(4689801-4689869)
chr5 (161-193)||(29788576-29788608)
[»] scaffold0650 (1 HSPs)
scaffold0650 (139-213)||(1743-1817)
[»] scaffold0062 (1 HSPs)
scaffold0062 (168-214)||(3727-3773)
[»] chr8 (8 HSPs)
chr8 (161-210)||(9624181-9624231)
chr8 (142-212)||(29611165-29611235)
chr8 (142-210)||(41548543-41548611)
chr8 (143-214)||(16485917-16485988)
chr8 (143-214)||(35225588-35225659)
chr8 (175-221)||(54129-54175)
chr8 (142-210)||(10466989-10467057)
chr8 (142-210)||(37618504-37618572)
[»] scaffold0054 (1 HSPs)
scaffold0054 (164-193)||(19854-19883)
[»] scaffold0595 (1 HSPs)
scaffold0595 (142-214)||(7019-7091)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 10184974 - 10184867
Alignment:
Q  115 atctactaataggtaagtaccgcacaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10184974 atctactagtaggtaagtactgcacaaaacaacacaatacaaggtggaacagcacatgacaaacttttatggtattgaacaattttttgtcttatatgat 10184875  T
Q  215 attttgta 222  Q
    ||||||||    
T  10184874 attttgta 10184867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 43189920 - 43189844
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgatattt 218  Q
    |||||||||||||||||  || |||||||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  43189920 aacaacacaatacaaggaagagcaacacatgataaacttttatggtattgaataattttttgtcttatacgatattt 43189844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 49495557 - 49495622
Alignment:
Q  145 aacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  49495557 aacacaatataaggtagaacaacacataacaaacttttatgatattgaacaattttttatcttata 49495622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 45577852 - 45577790
Alignment:
Q  138 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttt 200  Q
    |||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  45577852 acaaaacaacacaacataaggttgaacaacacatgacaaagttttatggtattgaataatttt 45577790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 52673752 - 52673815
Alignment:
Q  138 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 201  Q
    |||||||||||||| ||||||  ||||  ||||||||||||||||||||||||||| |||||||    
T  52673752 acaaaacaacacaacacaaggcagaactgcacatgacaaacttttatggtattgaataattttt 52673815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 37695699 - 37695631
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||| |||||| |||||||||| |||||    
T  37695699 aacaacacaatacaagggagaacagcacaagacaaatttttatggcattgaataattttttgttttata 37695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 31446033 - 31445974
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 201  Q
    |||||||||| |||| || ||| ||||||||||||||||||||||||||| | |||||||    
T  31446033 aacaacacaacacaaagtagaaaaacacatgacaaacttttatggtattggataattttt 31445974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 42034521 - 42034484
Alignment:
Q  164 caacacatgacaaacttttatggtattgaacaattttt 201  Q
    |||||||||||||||||||||||||||||| |||||||    
T  42034521 caacacatgacaaacttttatggtattgaataattttt 42034484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 7555119 - 7555047
Alignment:
Q  138 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||| |||||   ||||| |||| |||||| |||||||| |||||| |||||||||| |||||    
T  7555119 acaaaacaacacaacacaagacagaacatcacacgacaaatttttatggcattgaataattttttgttttata 7555047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 22318522 - 22318470
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||||||||| ||||||| ||||||| ||||| |||| |||||||||    
T  22318522 aacaacacatgacaaatttttatgatattgaataatttcttgttttatatgat 22318470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 41720771 - 41720839
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||||| || |||| || ||||||||||||||||||||| ||| ||||| | ||||||| ||||||||    
T  41720771 aacaacataacacaaagtagaacaacacatgacaaactttaatgatattgtataatttttagtcttata 41720839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 16320449 - 16320507
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttt 200  Q
    |||||||||||| ||||  |||||||||| |||||| |||||||| |||||| ||||||    
T  16320449 aacaacacaatagaagggagaacaacacaagacaaatttttatggcattgaataatttt 16320507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 9435345 - 9435394
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||| |||||||||||||| |||||||  |||||| ||||||||    
T  9435345 gaacaacacacgacaaacttttatgatattgaattatttttggtcttata 9435394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 44324481 - 44324432
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||| ||||||||||| |||||||| |||||| |||||||||| |||||    
T  44324481 gaacagcacatgacaaatttttatggcattgaataattttttgttttata 44324432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 37859374 - 37859338
Alignment:
Q  168 acatgacaaacttttatggtattgaacaattttttgt 204  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  37859374 acatgacaaacttgtattgtattgaacaattttttgt 37859338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 47642649 - 47642581
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||||||  ||||| |||| || ||| |||||||  |||||| |||||||||| |||||    
T  47642649 aacaacacaatacaagggagaacagcacaggataaatttttatgacattgaataattttttgttttata 47642581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 50178651 - 50178583
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||| ||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  50178651 aacatcacaatacaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttata 50178583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 53200782 - 53200730
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||  ||||| ||||||||||||||| |||||||||| || ||||||    
T  53200782 aacaacacagaacaaatttttatggtattgaataattttttgttttgtatgat 53200730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 42547526 - 42547463
Alignment:
Q  138 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 201  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  42547526 acaaaacaacacgatacaaggtagaacaacacatgacaaacttttatgatattgaataattttt 42547463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 42035839 - 42035769
Alignment:
Q  140 aaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||  | ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  42035839 aaaacaacacagaataaggtagaacaacacttgacaaacttttatggtattgaacaattttttctcttata 42035769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 28625059 - 28625010
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  28625059 gaacaacacaagacaaacttttatggtattgaataattttttgtcttata 28625010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 49107135 - 49107180
Alignment:
Q  165 aacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  49107135 aacacatgacaaacttatatgatatcgaacaattttttgtcttata 49107180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 3867788 - 3867736
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||||||||  ||||||||||||||| ||||| |||| |||||||||    
T  3867788 aacaacacatgacaagtttttatggtattgaataatttcttgttttatatgat 3867736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 10747143 - 10747211
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  10747143 aacaacacaatacaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttata 10747211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 22484901 - 22484833
Alignment:
Q  143 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatat 211  Q
    ||||||||| | ||||| ||||| |||| |||||| ||||||||||||||| |||||| ||| ||||||    
T  22484901 acaacacaacataaggtagaacagcacaagacaaatttttatggtattgaataattttctgtattatat 22484833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 31883181 - 31883113
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||| ||||||||||||  |||||||||| |||||| |||||||  |||||| |||||||||| |||||    
T  31883181 aacagcacaatacaagggagaacaacacaggacaaatttttatgacattgaataattttttgttttata 31883113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 44000207 - 44000255
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||| ||| |||||||||||||||||||||| ||||||| ||||||||    
T  44000207 aacaatacaagacaaacttttatggtattgaataatttttggtcttata 44000255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 51925367 - 51925299
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||| ||||| ||||||  ||||| ||||||||||| |||||||| |||||| |||||||||| |||||    
T  51925367 aacagcacaacacaaggcagaacagcacatgacaaatttttatggcattgaataattttttgttttata 51925299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 5442222 - 5442285
Alignment:
Q  148 acaatacaaggtggaacaacacatgacaaa-cttttatggtattgaacaattttttgtcttata 210  Q
    ||||||||||||  ||||||||||||||||  |||||||| |||||| |||||||||| |||||    
T  5442222 acaatacaaggtataacaacacatgacaaattttttatggcattgaataattttttgttttata 5442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 39079332 - 39079285
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaattttttgtcttat 209  Q
    ||||||||||||||||||||||| |||||| | |||||||| ||||||    
T  39079332 aacaacacatgacaaacttttattgtattggataattttttatcttat 39079285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 51813319 - 51813386
Alignment:
Q  143 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||||||| ||||||  ||||||||||||| |||||||||| ||  |  ||||||||||||||||||    
T  51813319 acaacacaacacaaggcagaacaacacatgataaacttttatagtccttgacaattttttgtcttata 51813386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 8067194 - 8067144
Alignment:
Q  164 caacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||||| |||||||||||||||||  ||||||  |||||||||||    
T  8067194 caacacatgacatacttttatggtattgaatgatttttgatcttatatgat 8067144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 3964210 - 3964287
Alignment:
Q  138 acaaaacaacacaatacaaggtggaacaacacatgacaaacttt-tatggtattgaacaattttttgtcttatatgat 214  Q
    |||| ||||||||||||||||  ||||| |||| |||||| ||| |||| ||||||| |||||| ||| |||||||||    
T  3964210 acaacacaacacaatacaaggcagaacagcacaagacaaattttgtatgatattgaataattttatgttttatatgat 3964287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 27824855 - 27824782
Alignment:
Q  142 aacaacacaatacaaggt-ggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||| ||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||  |||||||||||    
T  27824855 aacatcacaacacaaggttggaacaatacatgacaaacttttatggtattgaataatttttgatcttatatgat 27824782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 18597362 - 18597290
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||| || |||| ||||||||||| | ||| ||||||||||||||| |||||||||| |||||||||    
T  18597362 aacaacacaacactaggtagaacaacacataataaatttttatggtattgaataattttttgttttatatgat 18597290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 31870304 - 31870236
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||| ||||  ||||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  31870304 aacaacacaatataagggagaacaacacatgacaaatttttatggcattgaataattttttgttttata 31870236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 13412644 - 13412702
Alignment:
Q  163 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatgatattttgt 221  Q
    ||||||||||||||| |||||| |||||||| |||||||  ||||||||||| ||||||    
T  13412644 acaacacatgacaaatttttatagtattgaataatttttcatcttatatgattttttgt 13412702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 29203104 - 29203059
Alignment:
Q  168 acatgacaaacttttatggtattgaacaattttttgtcttatatga 213  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||||    
T  29203104 acatgacaaatttttatgatattgaacaattatttgtcttatatga 29203059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 35004329 - 35004264
Alignment:
Q  145 aacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||||||||||||  ||||||||||| ||||||||||||| ||||||| | ||||| || |||||    
T  35004329 aacacaatacaaggcagaacaacacataacaaacttttatgatattgaatagtttttggtattata 35004264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 1004630 - 1004558
Alignment:
Q  138 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||| | |||   ||||| |||||||||||||| ||  |||||||||| ||||||||||||||    
T  1004630 acaaaacaacacaacataagaaagaacatcacatgacaaacttataatgtattgaacatttttttgtcttata 1004558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 4064142 - 4064096
Alignment:
Q  153 acaaggtggaacaacacatgacaaacttttatggtattgaacaattt 199  Q
    ||||||| |||||| |||||||||||||||||| ||||||| |||||    
T  4064142 acaaggtagaacaatacatgacaaacttttatgatattgaataattt 4064096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 7396306 - 7396269
Alignment:
Q  163 acaacacatgacaaacttttatggtattgaacaatttt 200  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  7396306 acaacacatgacaaatttttatggtattgaataatttt 7396269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 9200575 - 9200506
Alignment:
Q  150 aatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgatatttt 219  Q
    |||||||| | ||| ||||||||||||| |||||| ||||| || ||||||| ||||| |||||| ||||    
T  9200575 aatacaagatagaataacacatgacaaatttttatcgtattaaataatttttggtcttttatgatttttt 9200506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 14808204 - 14808136
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||||||  ||| | |||| |||||| |||||||| |||||| ||||||| || |||||    
T  14808204 aacaacacaatacaagggagaatagcacaggacaaatttttatggaattgaataatttttagttttata 14808136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 32614122 - 32614074
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||||| |||||||||||||||||||||  | ||||||| ||||||||    
T  32614122 aacaacatatgacaaacttttatggtattatataatttttggtcttata 32614074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 29455992 - 29455940
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  29455992 aacaacacatgacaaacttttatggtattgaataatatttggtcttatatgat 29455940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 48445450 - 48445522
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||| ||||||   |||||||||||||||| ||||||||||||||| ||||| |||| |||||||||    
T  48445450 aacaacacaacacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttatatgat 48445522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 1363566 - 1363634
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||  | ||||| ||||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  1363566 aacaacacatcagaaggtagaacaacacatgacaaatttttatggcattgaataattttttgttttata 1363634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 9913454 - 9913522
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||| |||||| ||||||| || |||||    
T  9913454 aacaacacaatacaagggagaacaccacatgacaaatttttatggaattgaataatttttagttttata 9913522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 9927142 - 9927210
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||| |||||| ||||||| || |||||    
T  9927142 aacaacacaatacaagggagaacaccacatgacaaatttttatggaattgaataatttttagttttata 9927210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 14608558 - 14608486
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||| ||||||   ||||||| | ||||||||||||||||||| ||||||||||  |||||||||||    
T  14608558 aacaacacaacacaaggcataacaacataggacaaacttttatggtattaaacaatttttgatcttatatgat 14608486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 34295570 - 34295498
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||||||    
T  34295570 aacaacacaatacaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttatatgat 34295498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 15035400 - 15035357
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaattttttgt 204  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  15035400 gaacaacacatgacaaatttttatggtattgaataattttttgt 15035357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 41903699 - 41903648
Alignment:
Q  163 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||||||    
T  41903699 acaacacatcataaacttttatggtcttgaacaattttttgttttatatgat 41903648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 29372926 - 29372873
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||| ||| ||||||||||||||||||| || ||||||| ||||||||||||    
T  29372926 gaacaatacaagacaaacttttatggtattaaataatttttggtcttatatgat 29372873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 3359982 - 3359939
Alignment:
Q  167 cacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||    
T  3359982 cacatgataaacttttatgatattgaataattttttgtcttata 3359939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 22724197 - 22724126
Alignment:
Q  143 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    ||||||||| | ||||  |||||||||| || ||| ||||||||||||||| |||||| ||| |||||||||    
T  22724197 acaacacaacataaggcagaacaacacaagataaatttttatggtattgaataattttctgtattatatgat 22724126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 329425 - 329471
Alignment:
Q  168 acatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||| ||||||||||||||| ||||| |||| |||||||||    
T  329425 acatgacaaatttttatggtattgaataatttcttgttttatatgat 329471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 8083879 - 8083830
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||| || |||||||||| |||||||| | ||||||||||||||||    
T  8083879 gaacaacatataacaaacttttgtggtattgcataattttttgtcttata 8083830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 2048877 - 2048929
Alignment:
Q  138 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtatt 190  Q
    |||||||||||||| ||||||  ||||||||||||| |||||  |||||||||    
T  2048877 acaaaacaacacaacacaaggcagaacaacacatgataaactcgtatggtatt 2048929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 43368130 - 43368198
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||| ||||||||||||  ||||| ||||||||||| ||||||   |||||| |||||||||| |||||    
T  43368130 aacagcacaatacaagggagaacagcacatgacaaatttttatcacattgaataattttttgttttata 43368198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 6896093 - 6896163
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 212  Q
    |||||||||| ||||||   |||||||||||||||| ||||||||||||||| ||||| |||| |||||||    
T  6896093 aacaacacaacacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttatatg 6896163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 32766670 - 32766602
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||||||||| |||||  |||||||||| |||||| |||||||| |||||| |||||||||| |||||    
T  32766670 aacaacacaatgcaagggagaacaacacaggacaaatttttatggcattgaataattttttgttttata 32766602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 35170359 - 35170323
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaatt 198  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35170359 aacaacacatgacaaacttttatggtgttgaacaatt 35170323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 27462965 - 27462903
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgt 204  Q
    |||| ||||| ||||||| ||||||||||||||||| || ||||  |||||| ||||||||||    
T  27462965 aacagcacaacacaaggtagaacaacacatgacaaatttatatgacattgaataattttttgt 27462903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 30712812 - 30712854
Alignment:
Q  172 gacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||| ||||||||||||||| |||||||||| |||||||||    
T  30712812 gacaaatttttatggtattgaataattttttgttttatatgat 30712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 42202032 - 42202072
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaatttttt 202  Q
    |||||||| |||||| |||||||||||||||| ||||||||    
T  42202032 aacaacacttgacaaccttttatggtattgaataatttttt 42202072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 15540110 - 15540058
Alignment:
Q  162 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||||||||  ||||||||||||||| |||||||||| |||||||||    
T  15540110 aacaacacatgacaagtttttatggtattgaataattttttgttttatatgat 15540058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 32785434 - 32785366
Alignment:
Q  140 aaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctta 208  Q
    ||||||| | |||||||||  |||||||||| ||||||||||||||||| |||| ||||||| ||||||    
T  32785434 aaaacaatataatacaaggcagaacaacacaagacaaacttttatggtaatgaataatttttggtctta 32785366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 33937153 - 33937089
Alignment:
Q  138 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttttt 202  Q
    |||||||| |||| || ||||| |||||||||| |||||||||||||||||||  ||||||||||    
T  33937153 acaaaacatcacactataaggtagaacaacacaagacaaacttttatggtattagacaatttttt 33937089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 13994319 - 13994242
Alignment:
Q  138 acaaaacaacacaatacaaggtggaacaacacatgacaaacttt-tatggtattgaacaattttttgtcttatatgat 214  Q
    |||| ||||||||||||||||  |||||||||| |||||| ||| |||| ||||||| |||||| ||| |||||||||    
T  13994319 acaacacaacacaatacaaggcagaacaacacaagacaaattttgtatgatattgaataattttatgttttatatgat 13994242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 38663066 - 38663134
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||| ||||  |||||||||| |||||| |||||||  |||||| |||||||||| |||||    
T  38663066 aacaacacaatataagggagaacaacacaggacaaatttttatgacattgaataattttttgttttata 38663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 47093063 - 47093003
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgatattttgt 221  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||| |||||| ||| ||||||    
T  47093063 gaacaacacatgacaaatttttataatattgaataattttttgccttatacgattttttgt 47093003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 504631 - 504572
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 201  Q
    |||||||||| |||| || ||| |||||||| |||| ||||||||||||| |||||||||    
T  504631 aacaacacaacacaaagtagaataacacatgtcaaatttttatggtattggacaattttt 504572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 2761774 - 2761723
Alignment:
Q  163 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    ||||||||||||| |||||||| |||||||| ||||||| || |||||||||    
T  2761774 acaacacatgacagacttttatagtattgaataatttttggttttatatgat 2761723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 24173200 - 24173141
Alignment:
Q  148 acaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctt 207  Q
    |||||||||  | ||||||||||||||||||||||| ||||||  |||| ||||||||||    
T  24173200 acaatacaaaatagaacaacacatgacaaacttttaaggtatttgacaactttttgtctt 24173141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 6144224 - 6144154
Alignment:
Q  144 caacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||| | ||||  ||||| |||| |||||| ||||||||||||||| |||||| ||| |||||||||    
T  6144224 caacacaacataaggcagaacatcacaagacaaatttttatggtattgaataattttctgttttatatgat 6144154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 32468024 - 32467982
Alignment:
Q  179 ttttatggtattgaacaattttttgtcttatatgatattttgt 221  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  32468024 ttttatggtattgactaattttttgtcttatatgattttttgt 32467982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 34284039 - 34283997
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaattttttg 203  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  34284039 gaacaacacaagacaaacttttatggtattgaataagtttttg 34283997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 39739051 - 39739013
Alignment:
Q  168 acatgacaaacttttatggtattgaacaattttttgtct 206  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  39739051 acatgataaatttttatggtattgaacaattttttgtct 39739013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 49799312 - 49799378
Alignment:
Q  143 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttat 209  Q
    ||||| ||||||||| | ||||| |||| |||||||||||||| ||||||| ||| ||| |||||||    
T  49799312 acaactcaatacaagctagaacaccacaagacaaacttttatgatattgaataatatttggtcttat 49799378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 15324110 - 15324159
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    ||||||||||||| || ||||||||||| | || ||||||||||||||||    
T  15324110 gaacaacacatgaaaagcttttatggtaataaataattttttgtcttata 15324159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 26894988 - 26895033
Alignment:
Q  111 tttgatctactaataggtaagtaccgcacaaaacaacacaatacaa 156  Q
    |||||||| |||| |||||||||||| |||||||||||||| ||||    
T  26894988 tttgatctgctaaaaggtaagtaccgaacaaaacaacacaagacaa 26895033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 44738282 - 44738213
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaa-cttttatggtattgaacaattttttgtcttata 210  Q
    ||||| |||| ||||||| |||||||||||||||||  |||||||| |||||  |||||||||| |||||    
T  44738282 aacaatacaacacaaggtagaacaacacatgacaaattttttatggcattgagtaattttttgttttata 44738213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 43678121 - 43678077
Alignment:
Q  166 acacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||| |||| | |||||||||||| ||||||||||||||||||    
T  43678121 acacataacaagcctttatggtattgtacaattttttgtcttata 43678077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 45658739 - 45658827
Alignment:
Q  126 ggtaagtaccgcacaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    ||||||||| | ||| |||| ||||| |||||   ||| | ||||||||||| ||||||||  ||||| |||||||||| |||||||||    
T  45658739 ggtaagtactggacataacagcacaacacaagacagaatagcacatgacaaatttttatggctttgaataattttttgttttatatgat 45658827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 50304585 - 50304653
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||| ||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  50304585 aacagcacaatacaagggagaacagcacaggacaaatttttatgacattgaataattttttgttttata 50304653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 31644376 - 31644443
Alignment:
Q  147 cacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    ||||||||||||| |||||||||| |||||| |||||||  |||||| |||||| ||| |||||||||    
T  31644376 cacaatacaaggtagaacaacacaagacaaatttttatgacattgaataattttatgttttatatgat 31644443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 42013441 - 42013506
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctt 207  Q
    |||||||||||| || || |||||| | |||| ||||||||||| ||||||||||||||| |||||    
T  42013441 aacaacacaataaaaagtagaacaatagatgataaacttttatgatattgaacaatttttggtctt 42013506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 4689869 - 4689801
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||| | ||||  ||||||||||||||||| |||||||  |||||| |||||||||| |||||    
T  4689869 aacaacacaacataaggcagaacaacacatgacaaatttttatgacattgaataattttttgttttata 4689801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 29788608 - 29788576
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaa 193  Q
    ||||||||||||| |||||||||||||||||||    
T  29788608 gaacaacacatgataaacttttatggtattgaa 29788576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 1817 - 1743
Alignment:
Q  139 caaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatga 213  Q
    ||||||| ||||| |||||   ||||||||||  ||||| ||||||||||||||| |||||||||| ||||||||    
T  1817 caaaacagcacaacacaagagagaacaacacagaacaaatttttatggtattgaataattttttgttttatatga 1743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 3773 - 3727
Alignment:
Q  168 acatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||||    
T  3773 acatgacaaacttttatgatattgaataattttttatcttatatgat 3727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 9624181 - 9624231
Alignment:
Q  161 gaacaacacatgacaaacttttatggtattgaacaa-ttttttgtcttata 210  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  9624181 gaacaacacatgacaaatttttatggtattgaataatttttttgtcttata 9624231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 29611235 - 29611165
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 212  Q
    |||||||||| ||||||   ||||||||| |||||| ||||||||||||||| ||||| |||| |||||||    
T  29611235 aacaacacaacacaaggcataacaacacaggacaaatttttatggtattgaataatttcttgttttatatg 29611165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 41548543 - 41548611
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  41548543 aacaacacaatacaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttata 41548611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 16485988 - 16485917
Alignment:
Q  143 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    ||||||||||| ||||  ||||| ||||  ||||| ||||||||||||||| |||||| ||| |||||||||    
T  16485988 acaacacaatataaggcagaacagcacaaaacaaatttttatggtattgaataattttctgtattatatgat 16485917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 35225588 - 35225659
Alignment:
Q  143 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    ||||||||| |||||   |||||||||| |||||| ||||||||||||||| |||||  ||| |||||||||    
T  35225588 acaacacaacacaagacagaacaacacaagacaaatttttatggtattgaataatttcctgttttatatgat 35225659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 54129 - 54175
Alignment:
Q  175 aaacttttatggtattgaacaattttttgtcttatatgatattttgt 221  Q
    ||||||||||||||||||| |||||||||||||| | ||| ||||||    
T  54129 aaacttttatggtattgaataattttttgtcttaaacgattttttgt 54175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 10466989 - 10467057
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  || ||| |||||||||| |||||    
T  10466989 aacaacacaatacaagggagaacagcacaggacaaatttttatgacatagaataattttttgttttata 10467057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 37618572 - 37618504
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 210  Q
    |||| ||||| ||||||  ||||| |||||||||||  ||||||| |||||| |||||||||| |||||    
T  37618572 aacagcacaacacaaggcagaacagcacatgacaaatgtttatggcattgaataattttttgttttata 37618504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 19854 - 19883
Alignment:
Q  164 caacacatgacaaacttttatggtattgaa 193  Q
    ||||||||||||||||||||||||||||||    
T  19854 caacacatgacaaacttttatggtattgaa 19883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 7091 - 7019
Alignment:
Q  142 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatgat 214  Q
    ||||||||||||||||   ||||||| || || ||||||||||||||||||| || ||   ||||||||||||    
T  7091 aacaacacaatacaagacagaacaacgcaagataaacttttatggtattgaataaattgcggtcttatatgat 7019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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