View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0367_low_28 (Length: 301)
Name: NF0367_low_28
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_low_28 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: scaffold0221 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 25160 - 25196
Alignment:
| Q |
167 |
gaacaagtagagtatactagggcgcttgagagaacca |
203 |
Q |
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| T |
25160 |
gaacaagtagagtatactagggcgcttgagagaacca |
25196 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 11593117 - 11593153
Alignment:
| Q |
108 |
cttcgaattgggagggcgatcctcccggtgaactgac |
144 |
Q |
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| T |
11593117 |
cttcgaattgggagggcgatcctcccaatgaactgac |
11593153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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