View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0367_low_31 (Length: 289)

Name: NF0367_low_31
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0367_low_31
NF0367_low_31
[»] chr8 (15 HSPs)
chr8 (68-226)||(2517029-2517187)
chr8 (78-140)||(10170375-10170437)
chr8 (97-148)||(34259803-34259854)
chr8 (107-149)||(3066041-3066083)
chr8 (185-226)||(2515735-2515776)
chr8 (109-142)||(25799154-25799187)
chr8 (107-147)||(1979413-1979453)
chr8 (109-143)||(16824392-16824426)
chr8 (111-145)||(31551857-31551891)
chr8 (97-139)||(43534933-43534975)
chr8 (109-142)||(25488801-25488834)
chr8 (97-149)||(6501494-6501546)
chr8 (97-149)||(14496033-14496084)
chr8 (107-143)||(28144067-28144103)
chr8 (107-143)||(29096951-29096987)
[»] chr6 (10 HSPs)
chr6 (107-148)||(34625734-34625775)
chr6 (107-149)||(34598537-34598579)
chr6 (113-148)||(14244051-14244086)
chr6 (110-140)||(6294557-6294587)
chr6 (107-149)||(30781416-30781458)
chr6 (107-145)||(32577482-32577520)
chr6 (107-144)||(4945264-4945301)
chr6 (107-139)||(7564182-7564214)
chr6 (108-148)||(17422274-17422314)
chr6 (97-149)||(24102051-24102103)
[»] chr4 (9 HSPs)
chr4 (107-148)||(32369930-32369971)
chr4 (96-138)||(18783987-18784029)
chr4 (96-149)||(3458172-3458225)
chr4 (106-149)||(26369447-26369490)
chr4 (107-146)||(31277042-31277081)
chr4 (106-148)||(12441788-12441830)
chr4 (107-148)||(843159-843200)
chr4 (111-140)||(2796554-2796583)
chr4 (107-143)||(12710008-12710044)
[»] chr3 (12 HSPs)
chr3 (107-142)||(49636844-49636879)
chr3 (97-148)||(28576716-28576767)
chr3 (107-154)||(32166201-32166248)
chr3 (107-150)||(47542533-47542576)
chr3 (107-140)||(18268023-18268056)
chr3 (97-142)||(21768612-21768657)
chr3 (101-142)||(55053787-55053828)
chr3 (97-149)||(7563206-7563258)
chr3 (102-142)||(31207845-31207885)
chr3 (107-143)||(36301998-36302034)
chr3 (97-141)||(41036776-41036820)
chr3 (124-172)||(55108269-55108317)
[»] chr1 (6 HSPs)
chr1 (100-143)||(26698193-26698236)
chr1 (107-154)||(29230059-29230106)
chr1 (107-141)||(48317604-48317638)
chr1 (107-148)||(1118414-1118455)
chr1 (108-141)||(4769327-4769360)
chr1 (110-147)||(6440870-6440907)
[»] chr2 (13 HSPs)
chr2 (102-148)||(11781576-11781622)
chr2 (107-147)||(14268751-14268791)
chr2 (107-146)||(13252319-13252358)
chr2 (106-148)||(6736490-6736532)
chr2 (107-149)||(8765419-8765461)
chr2 (107-149)||(28341323-28341365)
chr2 (83-140)||(30563417-30563474)
chr2 (95-147)||(31095144-31095197)
chr2 (107-147)||(34687007-34687048)
chr2 (107-147)||(34709419-34709460)
chr2 (97-142)||(39459790-39459835)
chr2 (107-139)||(17427327-17427359)
chr2 (107-147)||(42043215-42043255)
[»] scaffold0147 (1 HSPs)
scaffold0147 (96-149)||(37670-37723)
[»] chr7 (8 HSPs)
chr7 (107-170)||(18750852-18750917)
chr7 (107-148)||(28266474-28266515)
chr7 (112-148)||(31020714-31020750)
chr7 (111-150)||(40826513-40826552)
chr7 (110-142)||(7139462-7139494)
chr7 (108-148)||(13803668-13803708)
chr7 (113-141)||(13859528-13859556)
chr7 (97-149)||(22371078-22371130)
[»] chr5 (3 HSPs)
chr5 (107-138)||(28322251-28322282)
chr5 (107-140)||(9878050-9878083)
chr5 (96-141)||(39828473-39828518)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 68 - 226
Target Start/End: Complemental strand, 2517187 - 2517029
Alignment:
Q  68 aggcatgtctggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtcattgtcagtgtcgtagtgt 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517187 aggcatgtctggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtcattgtcagtgtcgtagtgt 2517088  T
Q  168 cgtgtcctgtgtgagtgcttcataggttttgaatttccctaattacaataacaacaatc 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517087 cgtgtcctgtgtgagtgcttcataggttttgaatttccctaattacaataacaacaatc 2517029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 10170375 - 10170437
Alignment:
Q  78 ggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattatta 140  Q
    |||||| |||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||    
T  10170375 ggtatcagacaccaacacaacccatgtagttacattcaattaatttattttctcaaattatta 10170437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 34259803 - 34259854
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||||| |||||| ||||||||| ||||||||||||||||||||||| ||||    
T  34259803 acacgtctagttatattcaattatttcattttctcaaattattaccgatgtc 34259854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 3066083 - 3066041
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  3066083 ttacattcaattaatccattttctcaaattattacctgtgtca 3066041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 2515776 - 2515735
Alignment:
Q  185 cttcataggttttgaatttccctaattacaataacaacaatc 226  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  2515776 cttcataggttctaaatttccctaattacaataacaacaatc 2515735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 25799187 - 25799154
Alignment:
Q  109 acattcaattaattcattttctcaaattattacc 142  Q
    ||||||||||||||||||||||||||||||||||    
T  25799187 acattcaattaattcattttctcaaattattacc 25799154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 1979453 - 1979413
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgt 147  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  1979453 ttacatttaattaattaattttctcaaattattaccggtgt 1979413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 16824426 - 16824392
Alignment:
Q  109 acattcaattaattcattttctcaaattattaccg 143  Q
    |||||||| ||||||||||||||||||||||||||    
T  16824426 acattcaaataattcattttctcaaattattaccg 16824392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 31551857 - 31551891
Alignment:
Q  111 attcaattaattcattttctcaaattattaccggt 145  Q
    |||||||| ||||||||||||||||||||||||||    
T  31551857 attcaatttattcattttctcaaattattaccggt 31551891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 43534975 - 43534933
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattatt 139  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  43534975 acacatgtagttacattcaaatatttcattttctcaaattatt 43534933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 25488834 - 25488801
Alignment:
Q  109 acattcaattaattcattttctcaaattattacc 142  Q
    ||||||||||||||||||||||||||||| ||||    
T  25488834 acattcaattaattcattttctcaaattaatacc 25488801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 6501546 - 6501494
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    |||| ||| |||||||| ||||| |||||| ||||||||||||||| ||||||    
T  6501546 acacatgtggttacatttaattatttcattctctcaaattattaccagtgtca 6501494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 14496033 - 14496084
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    |||| |||||||||||||||| | | ||||||||||||||||||| |||||||    
T  14496033 acacatgtagttacattcaatcact-cattttctcaaattattactggtgtca 14496084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 28144067 - 28144103
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccg 143  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  28144067 ttacattctattaattgattttctcaaattattaccg 28144103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 29096987 - 29096951
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccg 143  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  29096987 ttacattcaattaatttattttcttaaattattaccg 29096951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 34625775 - 34625734
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  34625775 ttacattcaattaattcattttctcaaattattatcggtgtc 34625734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 34598579 - 34598537
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  34598579 ttacatccaattaattcattttctcaaattattatcggtgtca 34598537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 14244051 - 14244086
Alignment:
Q  113 tcaattaattcattttctcaaattattaccggtgtc 148  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14244051 tcaattaattcattttctcaaattactaccggtgtc 14244086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 140
Target Start/End: Original strand, 6294557 - 6294587
Alignment:
Q  110 cattcaattaattcattttctcaaattatta 140  Q
    |||||||||||||||||||||||||||||||    
T  6294557 cattcaattaattcattttctcaaattatta 6294587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 30781416 - 30781458
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    ||||||||| |||||||||||| |||||||| |||||||||||    
T  30781416 ttacattcagttaattcattttatcaaattagtaccggtgtca 30781458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 32577482 - 32577520
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggt 145  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  32577482 ttacattcaattaattcattttctcaaatcatcaccggt 32577520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 4945301 - 4945264
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccgg 144  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  4945301 ttacattcaattaattcattttctcaaacaattaccgg 4945264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 7564182 - 7564214
Alignment:
Q  107 ttacattcaattaattcattttctcaaattatt 139  Q
    |||||||||||||||| ||||||||||||||||    
T  7564182 ttacattcaattaatttattttctcaaattatt 7564214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 17422274 - 17422314
Alignment:
Q  108 tacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    ||||||||||||  ||||||||||||||||||| |||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtc 17422314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 24102051 - 24102103
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    |||||||| ||||||||||| || |||| || |||||||||||||| ||||||    
T  24102051 acacgtgtggttacattcaaatagttcacttactcaaattattaccagtgtca 24102103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 32369930 - 32369971
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  32369930 ttacattcaattaattcattttctcaaattattatcggtgtc 32369971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 18784029 - 18783987
Alignment:
Q  96 aacacgtgtagttacattcaattaattcattttctcaaattat 138  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  18784029 aacacgtgtaattacattcaattacttcattttctcaaattat 18783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 3458172 - 3458225
Alignment:
Q  96 aacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    ||||||| || ||||||||||||| ||||||||||| | |||||||||||||||    
T  3458172 aacacgtataattacattcaattatttcattttctccatttattaccggtgtca 3458225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 26369447 - 26369490
Alignment:
Q  106 gttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||    
T  26369447 gttacattcaaataattcattttctcaaattactaccgatgtca 26369490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 31277042 - 31277081
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtg 146  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  31277042 ttacattcaattagttcattttctcaaattattatcggtg 31277081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 12441788 - 12441830
Alignment:
Q  106 gttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||| |||||||| ||||||||||||||| |||||||||||||    
T  12441788 gttagattcaattgattcattttctcaaagtattaccggtgtc 12441830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 843159 - 843200
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||| ||||| ||||||||||||||||||||||||| |||||    
T  843159 ttacgttcaaataattcattttctcaaattattaccagtgtc 843200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 2796583 - 2796554
Alignment:
Q  111 attcaattaattcattttctcaaattatta 140  Q
    ||||||||||||||||||||||||||||||    
T  2796583 attcaattaattcattttctcaaattatta 2796554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 12710044 - 12710008
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccg 143  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  12710044 ttacgttcaattaatttattttctcaaattattaccg 12710008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 49636844 - 49636879
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattacc 142  Q
    ||||||||||||||||||||||||||||||||||||    
T  49636844 ttacattcaattaattcattttctcaaattattacc 49636879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 28576767 - 28576716
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||| |||| ||||||||||||   |||||||||||||||||||||||||||    
T  28576767 acacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 32166201 - 32166248
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtcattgtc 154  Q
    |||||||||||||  ||||||||||||||||||||| |||||| ||||    
T  32166201 ttacattcaattatgtcattttctcaaattattaccagtgtcaatgtc 32166248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 47542576 - 47542533
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtcat 150  Q
    |||||||||| || |||||||||||||||||||||| |||||||    
T  47542576 ttacattcaaatagttcattttctcaaattattaccagtgtcat 47542533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 18268023 - 18268056
Alignment:
Q  107 ttacattcaattaattcattttctcaaattatta 140  Q
    |||| |||||||||||||||||||||||||||||    
T  18268023 ttacgttcaattaattcattttctcaaattatta 18268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 21768657 - 21768612
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattacc 142  Q
    |||| ||| ||||| ||||| |||||||||||||||||||||||||    
T  21768657 acacatgtggttacgttcaaataattcattttctcaaattattacc 21768612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 55053828 - 55053787
Alignment:
Q  101 gtgtagttacattcaattaattcattttctcaaattattacc 142  Q
    |||||||||||||||  ||||||||||||| |||||||||||    
T  55053828 gtgtagttacattcatataattcattttcttaaattattacc 55053787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 7563206 - 7563258
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    |||||||||| |||||||||||| | ||| ||||||||||||||  |||||||    
T  7563206 acacgtgtagatacattcaattattccatattctcaaattattattggtgtca 7563258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 31207885 - 31207845
Alignment:
Q  102 tgtagttacattcaattaattcattttctcaaattattacc 142  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  31207885 tgtagttacattcaattatgtcattttctcaaataattacc 31207845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 36302034 - 36301998
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccg 143  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  36302034 ttacattcaattaatttattttctcacattattaccg 36301998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 41036776 - 41036820
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattac 141  Q
    |||||||| ||||||||||| ||  ||||||||||||||||||||    
T  41036776 acacgtgtggttacattcaactatatcattttctcaaattattac 41036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 55108269 - 55108317
Alignment:
Q  124 attttctcaaattattaccggtgtcattgtcagtgtcgtagtgtcgtgt 172  Q
    ||||| |||||||||||||||||||||||||| | |  |||||||||||    
T  55108269 attttatcaaattattaccggtgtcattgtcaatatattagtgtcgtgt 55108317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 26698193 - 26698236
Alignment:
Q  100 cgtgtagttacattcaattaattcattttctcaaattattaccg 143  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  26698193 cgtgtaattacattcaattaattcattttctcagattattaccg 26698236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 29230106 - 29230059
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtcattgtc 154  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  29230106 ttacattcaattatgtcattttctcaaattattaccggtgtcaatgtc 29230059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 48317638 - 48317604
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattac 141  Q
    ||||||||||||| |||||||||||||||||||||    
T  48317638 ttacattcaattatttcattttctcaaattattac 48317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 1118414 - 1118455
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||||||||||||||||||||| ||||||||| ||| |||||    
T  1118414 ttacattcaattaattcattttttcaaattatcacccgtgtc 1118455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 4769327 - 4769360
Alignment:
Q  108 tacattcaattaattcattttctcaaattattac 141  Q
    ||||||||||||| ||||||||||||||||||||    
T  4769327 tacattcaattaactcattttctcaaattattac 4769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 6440870 - 6440907
Alignment:
Q  110 cattcaattaattcattttctcaaattattaccggtgt 147  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  6440870 cattcaataaattcattttctcaaattattaccagtgt 6440907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 11781576 - 11781622
Alignment:
Q  102 tgtagttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||    
T  11781576 tgtagttacattcaaatatttcattttctcaaattattactggtgtc 11781622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 14268751 - 14268791
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgt 147  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  14268751 ttacgttcaattaagtcattttctcaaattattaccggtgt 14268791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 13252319 - 13252358
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtg 146  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  13252319 ttacattcaactaattcattttctcacattattaccggtg 13252358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 6736532 - 6736490
Alignment:
Q  106 gttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||||||||||||| | ||| ||||||||||||||||||||||    
T  6736532 gttacattcaattattccatattctcaaattattaccggtgtc 6736490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 8765419 - 8765461
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||    
T  8765419 ttacattcaattaattcgttttcttaaattatcaccggtgtca 8765461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 28341365 - 28341323
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||    
T  28341365 ttacatttaattaattcattttctcaaactattaccggcgtca 28341323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 30563474 - 30563417
Alignment:
Q  83 ctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattatta 140  Q
    |||||||| ||| ||||| | |||||||||| |||||  |||||||||||||||||||    
T  30563474 ctgacaccgacacaacacctatagttacattgaattatgtcattttctcaaattatta 30563417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 31095197 - 31095144
Alignment:
Q  95 taacacgtgtagttacattcaattaattc-attttctcaaattattaccggtgt 147  Q
    |||||| |||||||| ||||||||| ||| ||||||||||||||||||| ||||    
T  31095197 taacacatgtagttatattcaattacttccattttctcaaattattaccagtgt 31095144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 34687048 - 34687007
Alignment:
Q  107 ttacattcaattaat-tcattttctcaaattattaccggtgt 147  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  34687048 ttactttcaattaatatcattttctcaaattattaccggtgt 34687007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 34709460 - 34709419
Alignment:
Q  107 ttacattcaattaat-tcattttctcaaattattaccggtgt 147  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  34709460 ttactttcaattaatatcattttctcaaattattaccggtgt 34709419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 39459835 - 39459790
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattacc 142  Q
    ||||||||  ||||||||||||||||||||| || |||||||||||    
T  39459835 acacgtgtgattacattcaattaattcatttccttaaattattacc 39459790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 17427327 - 17427359
Alignment:
Q  107 ttacattcaattaattcattttctcaaattatt 139  Q
    |||| ||||||||||||||||||||||||||||    
T  17427327 ttaccttcaattaattcattttctcaaattatt 17427359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 42043215 - 42043255
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgt 147  Q
    |||||||||||||||||||||| | ||||||||| ||||||    
T  42043215 ttacattcaattaattcattttattaaattattatcggtgt 42043255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 37670 - 37723
Alignment:
Q  96 aacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    ||||||| || ||||||||||||| ||||||||||| | |||||||||||||||    
T  37670 aacacgtataattacattcaattatttcattttctccatttattaccggtgtca 37723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 18750917 - 18750852
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtc-at-tgtcagtgtcgtagtgtcgt 170  Q
    |||||||||||||  ||||||||| |||||||||||| |||| || ||||||||||||||||||||    
T  18750917 ttacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcagtgtcgtagtgtcgt 18750852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 28266515 - 28266474
Alignment:
Q  107 ttacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  28266515 ttacatccaattaatttattttctcaaattattaccggtgtc 28266474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 31020714 - 31020750
Alignment:
Q  112 ttcaattaattcattttctcaaattattaccggtgtc 148  Q
    ||||||||||||||||||||||||| |||||||||||    
T  31020714 ttcaattaattcattttctcaaattgttaccggtgtc 31020750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 40826552 - 40826513
Alignment:
Q  111 attcaattaattcattttctcaaattattaccggtgtcat 150  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  40826552 attcaattaattcattttctcaaattatcaccagtgtcat 40826513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 7139462 - 7139494
Alignment:
Q  110 cattcaattaattcattttctcaaattattacc 142  Q
    ||||||||||||||||||||||||| |||||||    
T  7139462 cattcaattaattcattttctcaaaatattacc 7139494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 13803708 - 13803668
Alignment:
Q  108 tacattcaattaattcattttctcaaattattaccggtgtc 148  Q
    |||| ||||||| |||||||||||||||||||||| |||||    
T  13803708 tacactcaattatttcattttctcaaattattacctgtgtc 13803668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 13859556 - 13859528
Alignment:
Q  113 tcaattaattcattttctcaaattattac 141  Q
    |||||||||||||||||||||||||||||    
T  13859556 tcaattaattcattttctcaaattattac 13859528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 22371130 - 22371078
Alignment:
Q  97 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 149  Q
    |||| |||||||||||||||||| ||| |||||||| |||| |||| ||||||    
T  22371130 acacatgtagttacattcaattatttccttttctcatattaataccagtgtca 22371078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 28322282 - 28322251
Alignment:
Q  107 ttacattcaattaattcattttctcaaattat 138  Q
    ||||||||||||||||||||||||||||||||    
T  28322282 ttacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 9878050 - 9878083
Alignment:
Q  107 ttacattcaattaattcattttctcaaattatta 140  Q
    ||||||||||||||||||| ||||||||||||||    
T  9878050 ttacattcaattaattcatattctcaaattatta 9878083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 39828518 - 39828473
Alignment:
Q  96 aacacgtgtagttacattcaattaattcattttctcaaattattac 141  Q
    ||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  39828518 aacacatgtggttacattcaattatttcatattctcaaattattac 39828473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 858 times since January 2019
Visitors: 3069