View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0367_low_45 (Length: 242)
Name: NF0367_low_45
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_low_45 |
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| [»] chr6 (2 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 29328059 - 29328164
Alignment:
| Q |
137 |
ttaaaaaagataaaccaaatcctacaccactaacaagccccgagcgaacaccttgtttcgctggtccagaacattttttcccgtacatgtccatcacctt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29328059 |
ttaaaaaagataaaccaaatcctacaccactaacaagccccgagcgaacaccttgtttcgctggtccagaacattttttcccgtacatgtccatcacctt |
29328158 |
T |
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| Q |
237 |
tgattc |
242 |
Q |
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|||||| |
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| T |
29328159 |
tgattc |
29328164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 29332884 - 29332835
Alignment:
| Q |
96 |
tgaggtacatgaaaattcttcatcatctacccaacaaaatgttaaaaaag |
145 |
Q |
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| T |
29332884 |
tgaggtacatgaaaattcttcatcatctacccaacaacatgttaacaaag |
29332835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 5830546 - 5830637
Alignment:
| Q |
151 |
ccaaatcctacaccactaacaagccccgagcgaacaccttgtttcgctggtccagaacattttttcccgtacatgtccatcacctttgattc |
242 |
Q |
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| T |
5830546 |
ccaaatcctataccactaacaagccccaagcgaactccttgtttcgctgggcctaaacattttttactgtacatgtccatcacctttgattc |
5830637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 5767896 - 5767795
Alignment:
| Q |
141 |
aaaagataaaccaaatcctacaccactaacaagccccgagcgaacaccttgtttcgctggtccagaacattttttcccgtacatgtccatcacctttgat |
240 |
Q |
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|||||| |||||||||||| ||||||| |||||||| || ||||||||||||| |||| || |||||||| ||| |||||| ||||||||||||||| |
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| T |
5767896 |
aaaagagaaaccaaatcctgcaccactcacaagccctgaatgaacaccttgtttttctggccctgaacatttcttctggtacatatccatcacctttgat |
5767797 |
T |
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| Q |
241 |
tc |
242 |
Q |
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|| |
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| T |
5767796 |
tc |
5767795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 5826018 - 5825920
Alignment:
| Q |
139 |
aaaaaagataaaccaaatcctacaccactaacaagccccgagcgaacaccttgtttcgctggtccagaacattttttcccgtacatgtccatcaccttt |
237 |
Q |
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||||| || ||||| ||||||| |||||||||||| ||| | | |||||||||||| ||||| | |||||||||||| |||||| |||||||||||| |
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| T |
5826018 |
aaaaatgagaaaccgaatcctataccactaacaagtcccaacctaacaccttgtttttctggtgctgaacattttttctggtacatatccatcaccttt |
5825920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 5781427 - 5781360
Alignment:
| Q |
148 |
aaaccaaatcctacaccactaacaagccccgagcgaacaccttgtttcgctggtccagaacatttttt |
215 |
Q |
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|||||||||||||||||||||||||| ||| | | ||||||||||| ||||| | ||||||||||| |
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| T |
5781427 |
aaaccaaatcctacaccactaacaagtcccaacctaacaccttgttattctggtgctgaacatttttt |
5781360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 26759 - 26692
Alignment:
| Q |
148 |
aaaccaaatcctacaccactaacaagccccgagcgaacaccttgtttcgctggtccagaacatttttt |
215 |
Q |
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|||||||||||||||||||||||||| ||| | | ||||||||||| ||||| | ||||||||||| |
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| T |
26759 |
aaaccaaatcctacaccactaacaagtcccaacctaacaccttgttattctggtgctgaacatttttt |
26692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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