View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0367_low_57 (Length: 204)

Name: NF0367_low_57
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0367_low_57
NF0367_low_57
[»] chr2 (1 HSPs)
chr2 (18-194)||(37757269-37757445)
[»] scaffold1717 (1 HSPs)
scaffold1717 (20-69)||(397-446)
[»] scaffold1527 (1 HSPs)
scaffold1527 (20-69)||(643-692)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 37757445 - 37757269
Alignment:
Q  18 gaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgtaaggtatccggaggagagtaatggcggcggcgccggagttgaagggaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37757445 gaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgtaaggtatccggaggagagtaatggcggtggcgccggagttgaagggaa 37757346  T
Q  118 tgatggtgaaaaagttgaacttcatcctgttattgaggaagaacatgaagatgagtatcatgatgctgatgatgatg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37757345 tgatggtgaaaaagttgaacttcatcctgttattgaggaagaacatgaagatgagtatcatgatgctgatgatgatg 37757269  T

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Target: scaffold1717 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1717
Description:

Target: scaffold1717; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 446 - 397
Alignment:
Q  20 agtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt 69  Q
    ||||| |||||||| ||||| | ||||||||||||||||||||| |||||    
T  446 agtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1527 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1527
Description:

Target: scaffold1527; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 692 - 643
Alignment:
Q  20 agtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt 69  Q
    ||||| |||||||| ||||| | ||||||||||||||||||||| |||||    
T  692 agtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt 643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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