View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0367_low_58 (Length: 201)
Name: NF0367_low_58
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_low_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 42945385 - 42945499
Alignment:
| Q |
1 |
tccataaactccccaagacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagctacagggatcttacgcaatgcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42945385 |
tccataaactccccaagacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagctacagggatcttacgcaatgcac |
42945484 |
T |
|
| Q |
101 |
ttttctttaaaccct |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42945485 |
ttttctttaaaccct |
42945499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41763182 - 41763260
Alignment:
| Q |
1 |
tccataaactcccc--aagacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagc |
77 |
Q |
| |
|
|||||||||||||| | |||||||| |||| | |||||| | ||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
41763182 |
tccataaactccccctatgacaaattcgacaatttgtggccgtaaaactagtaccattacctccaaaaccataaacagc |
41763260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 34171902 - 34171962
Alignment:
| Q |
17 |
gacaaattggacattctgtggctgcaaaactagtactactacctccagaaccataaacagc |
77 |
Q |
| |
|
|||||||| |||| | |||||| | ||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
34171902 |
gacaaattcgacaatttgtggccgtaaaactagtaccattacctccaaaaccataaacagc |
34171962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 991 times since January 2019
Visitors: 3074