View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0367_low_7 (Length: 519)
Name: NF0367_low_7
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Original strand, 38216443 - 38216926
Alignment:
| Q |
14 |
ctgttgctgaaggtggatttagtcccttcttcaattcccctatctgaaacaacaagatttcaaaatataatattagtatcactttacatatnnnnnnnn- |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38216443 |
ctgttgctgaaggtggatttagtcccttcttcaattcccctatctgaaacaacaagatttcaaaatataatattagtatcacttaacatataaaaacaaa |
38216542 |
T |
|
| Q |
113 |
-------gttattgaaacattaatctatttattcaattttggtctgtaataataaaatcagttgaaattattttttgagggaaaaatgaaactcattgtt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38216543 |
aaaaaaagttattgaaacattaatctatttattcaattttggtctgtaataataaaatcagttgaaattattttttgagggaaaaatgaaactaattgtt |
38216642 |
T |
|
| Q |
206 |
atacatgtagaaattttttatacgtgcattcaatcacnnnnnnnattggnnnnnnnnntctcaccaataagcgaatgctatcaaatgcatgtgcaacaaa |
305 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38216643 |
atacatgtagaaatcttatatacgtgcattcaatcactttttttattggaaaaaaaa-tctcaccaataagtgaatgctatcaaatgcatgtgcaacaaa |
38216741 |
T |
|
| Q |
306 |
aattatattgattgtggtgtatagaaatggaattggaagtctttattcattgatataacaatacacaatcaaacgacaataacaaaacactatccacaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38216742 |
aattatattgattgtggtgtatagaaatggaattagaagtctttattatttgatataacaatacacaatcaaacgacaataacaaaacactatccacaat |
38216841 |
T |
|
| Q |
406 |
aactgtactaatgggttcatggtagggcatgattttgagtatgtcctattcataacactagtgtcgtcttttttatgaaccgaat |
490 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38216842 |
aactgtactaatgggttcacggtagggcatgattttgagtatgtcctattcataacactagtgtcgtcttttttgtgaaccgaat |
38216926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 31748612 - 31748573
Alignment:
| Q |
25 |
ggtggatttagtcccttcttcaattcccctatctgaaaca |
64 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
31748612 |
ggtggatttagtcctttcttcaattctcctatctgaaaca |
31748573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 655 times since January 2019
Visitors: 3063