View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0367_low_8 (Length: 500)
Name: NF0367_low_8
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 43 - 489
Target Start/End: Complemental strand, 2837981 - 2837535
Alignment:
| Q |
43 |
aggtctccacaacatcatcctaattcgtaactgcaattatggtcgcatttgtcctcaatttcctgcaatatcaaggatcgcgattcagctgtaagtgtaa |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2837981 |
aggtctccacaacatcatcctaattcgtaactgcaattatggtcgcatttgtcctcaatttcctgcaatatcaaggatcgcgattcagccgtaagtgtaa |
2837882 |
T |
|
| Q |
143 |
ccagccaccgcaatttaaaaccatatttattttcaagacatagatttcctccacctattaggagtcctacctttgacattcaccaacctagttttcatat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2837881 |
ccagccaccgcaatttaaaaccatatttattttcaagacatagatttcctccacctattaggagtcctacctttgacattcaccaacctagttttcatat |
2837782 |
T |
|
| Q |
243 |
cagaagtagtagcaggtgtctgtcttccaaactcaacctcaccatctccatcaacaccttctcctcttctctccacaacactctctcctttaccaaaacc |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2837781 |
cagaagtagtagcaggtgtctgtcttccaaactcaacctcaccatctccatcaacaccttctcctcttctctccaaaacactctctcctttaccaaaacc |
2837682 |
T |
|
| Q |
343 |
atgcacaccaaacctcttactccacttaaaaaatcctttcttcttctcaaccattctctccatctgaacttgcattgcattacactgactctgcaaccta |
442 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2837681 |
atgcacaccaaacctcttactccacttaaaaaaccctttcttcttctcaaccattctctccatctgaacttgcattgcattacactgactctgcaaccta |
2837582 |
T |
|
| Q |
443 |
tgaacatcttcccttagcttctttatctctatctgttgagcattcat |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2837581 |
tgaacatcttcccttagcttctttatctctatctgttgagcattcat |
2837535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 480
Target Start/End: Original strand, 44263811 - 44263912
Alignment:
| Q |
379 |
tttcttcttctcaaccattctctccatctgaacttgcattgcattacactgactctgcaacctatgaacatcttcccttagcttctttatctctatctgt |
478 |
Q |
| |
|
||||||||||||| |||| | |||||||| ||||||| |||| ||||||||||||| ||| | |||||||||| | || || |||||||| || ||| |
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| T |
44263811 |
tttcttcttctcagccatcttgtccatctgtgcttgcatgacattgcactgactctgcagcctgtaaacatcttccttcagtttttttatctccatttgt |
44263910 |
T |
|
| Q |
479 |
tg |
480 |
Q |
| |
|
|| |
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|
| T |
44263911 |
tg |
44263912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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