View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0367_low_9 (Length: 468)
Name: NF0367_low_9
Description: NF0367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0367_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 307 - 431
Target Start/End: Complemental strand, 5500199 - 5500074
Alignment:
| Q |
307 |
ttagggagctttaataataaa-taaaaatgtaacttttgcatgtatattattttattttttgacagggtatgtgtatttattatcaaacatggaagaata |
405 |
Q |
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| T |
5500199 |
ttagggagctttaataataaaataaaaatgtaacttttgcatgtatattattttattttttgacagggtatgtgtatttattatcaaacatggaagaata |
5500100 |
T |
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| Q |
406 |
aaacactgacatataatcaacacata |
431 |
Q |
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| T |
5500099 |
aaacactgacatataatcaacacata |
5500074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 5500407 - 5500321
Alignment:
| Q |
80 |
cataggtagtaaatacttataagaatatcagtaaacaaatcatatatagaaatgtaaaaatacatttaaacatccctatgttctata |
166 |
Q |
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| T |
5500407 |
cataggtagtaaatagttataagaatatcagtaaacaaatcatatatagaaatggaaaaatacatttaaacatccctatgttctata |
5500321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 5500296 - 5500240
Alignment:
| Q |
238 |
aaatataactctagcattaaatgttcggataaactattcaaaaagtaactttaataa |
294 |
Q |
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| T |
5500296 |
aaatataactctagcattaaatgttcggataaactattcaaaaagtaactttaataa |
5500240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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