View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0369_low_1 (Length: 482)
Name: NF0369_low_1
Description: NF0369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0369_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 98 - 451
Target Start/End: Complemental strand, 16165135 - 16164783
Alignment:
| Q |
98 |
ataattaatcatctatgaataattagcttatgtatttgtgttataatttataataatttaannnnnnnnnncttctatataacatataccagaacgagtt |
197 |
Q |
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| T |
16165135 |
ataattaatcatctatgaataattaacttatgtatttgtgttataatttataataatttaatttttttt--cttctatatagcatataccagaacgggtt |
16165038 |
T |
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| Q |
198 |
tctattggtgctgcattggacaagaagatatctattcagttggttggctttgacaacgacaaaatttttctatgtccacttgtcaagaagtcatctacac |
297 |
Q |
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| T |
16165037 |
tctattggtgccacattggacaagaagatatttgttcagttggttggctttgacaacgacaaaagttttctatgtccacttgtcaagaagtcatctacac |
16164938 |
T |
|
| Q |
298 |
cttctaagattagtttgtataaaggttggattgattatcttgatcaagcaaaggc-aatatgagggtaaaagacaagcttcgctttcaattgtgttatcc |
396 |
Q |
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| T |
16164937 |
cttctaagattagtttgtataaaggttggattgattatcttgatcaagcaaaggcaaatatgagggtaaaagacaagcttcgctttcaattccgttatcc |
16164838 |
T |
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| Q |
397 |
ccattacagtttctctgttgaaattataaggaacaaacccaaataatttaaggta |
451 |
Q |
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| T |
16164837 |
ccattacagtttctctgttgaaattataaggaagaaacccaaataatttaaggta |
16164783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 204 - 425
Target Start/End: Complemental strand, 17050502 - 17050277
Alignment:
| Q |
204 |
ggtgctgcattggacaagaagatatctattcagttggttggctttgacaac---gacaaaatttttctatgtccacttgtcaagaagtcatctacacctt |
300 |
Q |
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| T |
17050502 |
ggtgttgcattggacaagaagaagactgttcagttggttgactttgacaacaatgataagatttttctttgtcctcttatcaagaagtcatcttcatctt |
17050403 |
T |
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| Q |
301 |
ctaagattagtttgtataaaggttggattgattatcttgatcaagcaaag-gcaatatgagggtaaaagacaagcttcgctttcaattgtgttatcccca |
399 |
Q |
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| T |
17050402 |
caaagattagtttgtataaaggctggattgattatcttgatgaagcaaagaaaaatatgaccttaaaagacaaacttcgttttcaattccactaagcaca |
17050303 |
T |
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| Q |
400 |
ttacagtttctctgttgaaattataa |
425 |
Q |
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| T |
17050302 |
ttacagtttttctgttgaaattataa |
17050277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41532100 - 41532028
Alignment:
| Q |
1 |
cattttttcacgaacgatcttactgtgacaaaatatttctaaggatgatgtgttgtgaacttctcatactatg |
73 |
Q |
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| T |
41532100 |
cattttttcacgaacaatcttactgtgacaaaatatttctaaggatgatgtgttgtgaacttctcatactatg |
41532028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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