View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0369_low_2 (Length: 453)
Name: NF0369_low_2
Description: NF0369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0369_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 59 - 453
Target Start/End: Complemental strand, 2490802 - 2490408
Alignment:
| Q |
59 |
atcataggataataggattatagtaaatctttagagaaattgccaagttaccgaatccttttgtatctcttgctgaattagctctctaacaggtctataa |
158 |
Q |
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| T |
2490802 |
atcataggataataggattatagtaaatctttagagaaattgccaagttaccgaatccttttgtatctcttgctgaattagctctctaacaggtctataa |
2490703 |
T |
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| Q |
159 |
gcagcggttgtgcataagttctgcatttaacaattaatgaaaatggaaaatgcattaagacatcagaaactaaacataagaaaagcatttgtagattgta |
258 |
Q |
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| T |
2490702 |
gcagcggttgtgcataagttctgcatttaacaattaatgaaaatggaaaatgcattaagacatcagaaactaaacataagaaaagcatttgtagattgta |
2490603 |
T |
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| Q |
259 |
acacgatagttaagttacggccataggaaaacaataatagagaaaaaccttcagatcacttccactatatccttcagtcatagttgcgagttccttaaaa |
358 |
Q |
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| T |
2490602 |
acacgatagttaagttacggccataggaaaacaataatagagaaaaaccttcagatcacttccactatatccttcagtcatagttgcgagttccttaaaa |
2490503 |
T |
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| Q |
359 |
tcaagtcccccgtgcaccttctctttagccaaaagggtcctcaatatattttctctgttctctgcagacggtagcccaaccatcatcctggtaat |
453 |
Q |
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| T |
2490502 |
tcaagtcccccgtgcaccttctctttagccaaaagggtcctcaatatattttctctgttctctgcggacggtagcccaaccataatcctggtaat |
2490408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 41589433 - 41589494
Alignment:
| Q |
124 |
tctcttgctgaattagctctctaacaggtctataagcagcggttgtgcataagttctgcatt |
185 |
Q |
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| T |
41589433 |
tctcttgctgaatcaactctctaactggccgataagcagcagttgtgcacaagttctgcatt |
41589494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 45989493 - 45989453
Alignment:
| Q |
304 |
aaccttcagatcacttccactatatccttcagtcatagttg |
344 |
Q |
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| T |
45989493 |
aaccttaagatcacttccactatatccttctgtcatagttg |
45989453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 44936113 - 44936073
Alignment:
| Q |
304 |
aaccttcagatcacttccactatatccttcagtcatagttg |
344 |
Q |
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| T |
44936113 |
aaccttaagatcacttccgctatatccttctgtcatagttg |
44936073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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