View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0369_low_5 (Length: 325)

Name: NF0369_low_5
Description: NF0369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0369_low_5
NF0369_low_5
[»] chr5 (7 HSPs)
chr5 (29-253)||(39675747-39675971)
chr5 (29-209)||(10866218-10866398)
chr5 (29-209)||(10873907-10874087)
chr5 (29-209)||(10878978-10879158)
chr5 (29-209)||(10884049-10884229)
chr5 (36-220)||(10887983-10888167)
chr5 (36-218)||(10045775-10045957)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 39675971 - 39675747
Alignment:
Q  29 aggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggt 128  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675971 aggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggt 39675872  T
Q  129 tcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgac 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675871 tcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgac 39675772  T
Q  229 agtgaattctgctgcctttggttct 253  Q
    ||||||||||||||| |||||||||    
T  39675771 agtgaattctgctgcttttggttct 39675747  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 10866398 - 10866218
Alignment:
Q  29 aggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggt 128  Q
    |||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||    
T  10866398 aggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggt 10866299  T
Q  129 tcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta 209  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   |||||||||||    
T  10866298 tcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta 10866218  T

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Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 10873907 - 10874087
Alignment:
Q  29 aggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggt 128  Q
    |||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||    
T  10873907 aggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggt 10874006  T
Q  129 tcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta 209  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   |||||||||||    
T  10874007 tcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta 10874087  T

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Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 10878978 - 10879158
Alignment:
Q  29 aggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggt 128  Q
    |||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||    
T  10878978 aggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggt 10879077  T
Q  129 tcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta 209  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   |||||||||||    
T  10879078 tcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta 10879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 10884049 - 10884229
Alignment:
Q  29 aggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggt 128  Q
    |||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||    
T  10884049 aggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggt 10884148  T
Q  129 tcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta 209  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   |||||||||||    
T  10884149 tcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta 10884229  T

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Target: chr5; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 10887983 - 10888167
Alignment:
Q  36 gccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatc 135  Q
    ||||||||||||  |||||||||  | | |||| ||||||||||||| ||||| |||||| |||| ||||||||  ||||||||||||||||||||||||    
T  10887983 gccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggatgtggagaggtgtagaggttcggatc 10888082  T
Q  136 ttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaag 220  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||| || ||||||||| || ||||||||||    
T  10888083 ttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaagaag 10888167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 10045957 - 10045775
Alignment:
Q  36 gccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatc 135  Q
    ||||||||||||| ||||||| |||| | |||| ||||||||||| | | |   |||||| ||||||||||| ||||| |||||||| ||||||||||||    
T  10045957 gccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtggaggttcggatc 10045858  T
Q  136 ttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaaga 218  Q
    || |||||||||| || ||||||||| || |||||||||||||| |||||||||||||  | |||||||||||| ||||||||    
T  10045857 ttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaaga 10045775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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