View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0369_low_6 (Length: 315)
Name: NF0369_low_6
Description: NF0369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0369_low_6 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 54632056 - 54632200
Alignment:
| Q |
94 |
gtccttctactacttaattgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgt |
193 |
Q |
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| T |
54632056 |
gtccttctactacttaattgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgt |
54632155 |
T |
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| Q |
194 |
aactgtggttcagaacttaacctgttatgttaacaatctccttgc |
238 |
Q |
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| T |
54632156 |
aactgtggttcagaacttaacctgttatgttaacaatctccttgc |
54632200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 52125432 - 52125333
Alignment:
| Q |
112 |
tgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgta-actgtggttcagaact |
210 |
Q |
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| T |
52125432 |
tgtattttgatgttaacggatgatgatattttatggtaggattcta-attctatcatgttttgaatgttatctatcactagtagaatgtggtttagaact |
52125334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 45313595 - 45313481
Alignment:
| Q |
116 |
ttttgatattaacctatgatgatat------tttatggtaggattat----agtttctatcatcttttgaatgttgactatcacttgtaactgtggttca |
205 |
Q |
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| T |
45313595 |
ttttgatattaacctatgatgatatgatatttgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcacttttaactgtgcttca |
45313496 |
T |
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| Q |
206 |
gaacttaacctgtta |
220 |
Q |
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| T |
45313495 |
gaacttaacttgtta |
45313481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 18189720 - 18189767
Alignment:
| Q |
164 |
atcatcttttgaatgttgactatcacttgtaactgtggttcagaactt |
211 |
Q |
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| T |
18189720 |
atcatgttttgaatgttggctaacatttgtaactgtggttcagaactt |
18189767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 8226 - 8267
Alignment:
| Q |
170 |
ttttgaatgttgactatcacttgtaactgtggttcagaactt |
211 |
Q |
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| T |
8226 |
ttttgaatgttgtctaacatttgtaactgtggttcagaactt |
8267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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