View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0369_low_9 (Length: 248)
Name: NF0369_low_9
Description: NF0369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0369_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 1565178 - 1565294
Alignment:
| Q |
105 |
tgagcggcatctcggcttctttttcatcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggattgttgcgtgtgctctcatgcac |
204 |
Q |
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| T |
1565178 |
tgagcggcatctcggctgctttttcatcatattcacgaatacgacgccataatttcatgtcatgttatattctcggattgttgtgtgtgttctcatgcac |
1565277 |
T |
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| Q |
205 |
aactaaaaccatgttac |
221 |
Q |
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| T |
1565278 |
aactaaaaccatgttac |
1565294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 36606723 - 36606666
Alignment:
| Q |
130 |
atcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggattgttg |
187 |
Q |
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| T |
36606723 |
atcatattcacaaatacggcgccataatttcatatcatgttgaattctcgaattgttg |
36606666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 35141936 - 35141878
Alignment:
| Q |
125 |
ttttcatcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggatt |
183 |
Q |
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| T |
35141936 |
tttttatcataatcacgaatacggcgccataactccatgtcttgttgaattctcggatt |
35141878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 12237441 - 12237499
Alignment:
| Q |
125 |
ttttcatcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggatt |
183 |
Q |
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| T |
12237441 |
ttttgatcatattcacgaatacggcgccataacttcatgtctagctgaattctcggatt |
12237499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 18695176 - 18695118
Alignment:
| Q |
125 |
ttttcatcatattcacgaatacgacgccataatttcatgtcatgttgtattctcggatt |
183 |
Q |
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|||| |||||||||||||||| | |||||||||| |||||| || || ||||||||||| |
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| T |
18695176 |
ttttaatcatattcacgaatatggcgccataattccatgtcgtgctgaattctcggatt |
18695118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 6899637 - 6899690
Alignment:
| Q |
167 |
tgttgtattctcggattgttgcgtgtgctctcatgcacaactaaaaccatgtta |
220 |
Q |
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| T |
6899637 |
tgttgtattctcgaactgatgtgtgtgttcttatgcacaactaaaaccatgtta |
6899690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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