View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_high_14 (Length: 402)
Name: NF0370_high_14
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 42724838 - 42725202
Alignment:
| Q |
19 |
tgtaacaactttaaaaaacactcattttaaaacggagtgagtaagtgataaatacccaattagaaagtgaaggttataaatacccaattcaactaaaaag |
118 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42724838 |
tgtaacaaccttaaacaacactcattttaaaacggagtgagtaaatgataaatatccaattagaaagtgaaggttataaatacccaattcaactaaaaaa |
42724937 |
T |
|
| Q |
119 |
aatccagtttgaaggggaaaaatatccgatgaatagataagcccacacttgagtgagagattcttggcatgtcaagtgttagtaagaatcttacattgaa |
218 |
Q |
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|||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
42724938 |
aatccagtttgaaggggataaatacccaatgaatagataagctcacacttgagtgagagattgttggaatgtcaagtgttagtaagaatcttacattgaa |
42725037 |
T |
|
| Q |
219 |
taaaaaacacattttgagaataatatagatgaaatgatccatatatctatgtctaaaggttttggatgaatatgtggtgtccaagtcatcttaaacgtta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| | ||||| |
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| T |
42725038 |
taaaaaacacattttgagaataatatagatgaaatgatccatatatctatgtctcaaagttttggatgaatatgtggtgtccaaatcatctttatcgtta |
42725137 |
T |
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| Q |
319 |
ctcaagacccaaaacaacgaccactttaagttcctcctcaagaacaaatagcggtgtcagagtcatggttcatctcactc |
398 |
Q |
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|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42725138 |
ctcaaggc---------------ctttaagttcctccacaagaacaaatagcggtgtcagagtcatggttcaactcactc |
42725202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 28410779 - 28410729
Alignment:
| Q |
11 |
aatatgtgtgtaacaactttaaaaaacactcattttaaaacggagtgagta |
61 |
Q |
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| T |
28410779 |
aatatgtgtgtaacaactttaaacgacattcattttgaaacggagggagta |
28410729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 19897478 - 19897528
Alignment:
| Q |
11 |
aatatgtgtgtaacaactttaaaaaacactcattttaaaacggagtgagta |
61 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| ||| ||||| |
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| T |
19897478 |
aatatgtgtgtaacaaccttaaacaacactcattttaaaacagagggagta |
19897528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 5295369 - 5295327
Alignment:
| Q |
11 |
aatatgtgtgtaacaactttaaaaaacactcattttaaaacgg |
53 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||||||||||||| |
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| T |
5295369 |
aatatgtgtgtaaaaactttaaacaacattcattttaaaacgg |
5295327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 9420036 - 9419986
Alignment:
| Q |
11 |
aatatgtgtgtaacaactttaaaaaacactcattttaaaacggagtgagta |
61 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| |||||||| ||||| |
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|
| T |
9420036 |
aatatgtgtggaacaactttaaacgacactcattttgaaacggagggagta |
9419986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 19451171 - 19451127
Alignment:
| Q |
11 |
aatatgtgtgtaacaactttaaaaaacactcattttaaaacggag |
55 |
Q |
| |
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||||||||||||| ||||||||| |||| ||||||| |||||||| |
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|
| T |
19451171 |
aatatgtgtgtaaaaactttaaacaacattcattttgaaacggag |
19451127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 24157312 - 24157364
Alignment:
| Q |
11 |
aatatgtgtgtaacaactttaaaaaacactcattttaaaacggagtgagtaag |
63 |
Q |
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|
||||||||||||| ||||||||| ||| |||||||||||| ||| ||||||| |
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|
| T |
24157312 |
aatatgtgtgtaaaaactttaaacgacattcattttaaaacagagagagtaag |
24157364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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