View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_high_15 (Length: 391)
Name: NF0370_high_15
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_high_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 39289222 - 39288832
Alignment:
| Q |
1 |
aaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctagaatgttaccaatggagaaaagtgtagctcttgatttaccatatgga |
100 |
Q |
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| T |
39289222 |
aaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtgtagctcttgatttaccatatgga |
39289123 |
T |
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| Q |
101 |
aaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaactgtgaaaccttgatccagcagaataa |
200 |
Q |
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| T |
39289122 |
aaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaactgtgaaaccttgatctagcagaataa |
39289023 |
T |
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| Q |
201 |
tagacaaccttgtcttcctttttggtggttctgtttttggtagtaccttaactttttcttggttattttctatgtcttgaacttcagctagaaattcata |
300 |
Q |
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| T |
39289022 |
tagacaaccttgacttcctttttggtggttctgtttttggtagtaccttaactttttcttggttattttctatgtcttgaacttcagctagaaattcata |
39288923 |
T |
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| Q |
301 |
ctcaacatcatcagcatcaatgttgatgtcacaaaaatgactacttgctcgactccgagttggactaataccttgactctgaggaagaatt |
391 |
Q |
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| T |
39288922 |
ctcaacatcatcagcatcaatgttgatgtcacaaaaatgactacttgctcgactccgagttggactaataccttgactctgaggaagaatt |
39288832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 39296105 - 39295752
Alignment:
| Q |
1 |
aaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctagaatgttaccaatggagaaaagtgtagctcttgatttaccatatgga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296105 |
aaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaggatgttaccaatggagaaaagtgtagctcttgatttaccatatgga |
39296006 |
T |
|
| Q |
101 |
aaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaactgtgaaaccttgatccagcagaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |
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| T |
39296005 |
aaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaacagtcctttgtacactgtgcaaccttgatccagcagaataa |
39295906 |
T |
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| Q |
201 |
tagacaaccttgtcttcctttttggtggttctgtttttggtagtaccttaactttttcttggttattttctatgtcttgaacttcagctagaaattcata |
300 |
Q |
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| |||||||| | || || ||||| || | ||||||||||||| |||||| |||||||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
39295905 |
tcgacaacctcgaattttttgttggtatgtcagactttggtagtacctcaactttctcttggttattttccatgtcctgaacttgagctagaaattcata |
39295806 |
T |
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| Q |
301 |
ctcaacatcatcagcatcaatgttgatgtcacaaaaatgactacttgctcgact |
354 |
Q |
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|||| |||| ||||||||||||||||||||||| || |||||||| |||||||| |
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| T |
39295805 |
ctcatcatcgtcagcatcaatgttgatgtcacagaagtgactactagctcgact |
39295752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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