View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0370_high_2 (Length: 760)

Name: NF0370_high_2
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0370_high_2
NF0370_high_2
[»] chr2 (1 HSPs)
chr2 (29-697)||(2710738-2711409)
[»] chr5 (1 HSPs)
chr5 (246-305)||(17862074-17862133)
[»] chr7 (4 HSPs)
chr7 (246-299)||(30531840-30531893)
chr7 (246-305)||(15735426-15735485)
chr7 (245-298)||(33787221-33787273)
chr7 (246-307)||(42440806-42440867)
[»] chr6 (2 HSPs)
chr6 (246-305)||(1580890-1580949)
chr6 (565-663)||(22708112-22708210)
[»] chr8 (1 HSPs)
chr8 (583-629)||(29050541-29050587)
[»] chr4 (1 HSPs)
chr4 (571-629)||(40675466-40675524)


Alignment Details
Target: chr2 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 29 - 697
Target Start/End: Complemental strand, 2711409 - 2710738
Alignment:
Q  29 agggagtgcatacaaatgatgctaagctaaatgtttatatactatataaagaaatactaataaaataaagaaggatttgacttttttgttagcaaagtaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711409 agggagtgcatacaaatgatgctaagctaaatgtttatatactatataaagaaatactaataaaataaagaaggatttgacttttttgttagcaaagtaa 2711310  T
Q  129 ttgtttaaattgttgtagatgtgtgagataactgatcatgtataaaagaatttgtcttagaa-taacagaagaggaataagtaggagtcg--gctatgta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |  ||||||||    
T  2711309 ttgtttaaattgttgtagatgtgtgagataactgatcatgtataaaagaatttgtcttagaaataacagaagaggaataagtaggagtagaggctatgta 2711210  T
Q  226 tgtgttatgtttttatatcatctttataaactctagtcagactttatttttaatataagtgggacttgattttttcaatagcatggatataattaaaagt 325  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2711209 tgtgttatgtttttatatcatctttataaactctagtcggactttatttttaatataagtgggactttattttttcaatagcatggatataattaaaagt 2711110  T
Q  326 tgtctaatcctgcctatctggtacggcatttaaatttcgattacgcaattactaagaagtctggcaatgttaacctctttcataaattcttctagccgtt 425  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711109 tgtctaatcctgcctatctggtacgacatttaaatttcgattacgcaattactaagaagtctggcaatgttaacctctttcataaattcttctagccgtt 2711010  T
Q  426 gtttagatgctcttgaaagtttttaatccatttttcattgtaccctcataaatttcaagtagcaccaatgaagctcatgatttgtgggatgatgaaattc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711009 gtttagatgctcttgaaagtttttaatccatttttcattgtaccctcataaatttcaagtagcaccaatgaagctcatgatttgtgggatgatgaaattc 2710910  T
Q  526 actgcaacaaaaacacaaagtagaccaatttttctgtgaatactaaggctctgattagtaaaattaagttataacttagatgatagttgaaaagctagtt 625  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  2710909 actgcaacaaaaatacaaagtaaaccaatttttctgtgaatactaaggctctgattagtaaaattaagttataagttagttgatagttgaaaagctagtt 2710810  T
Q  626 tataactaataattgatagtttatatttgaaaagctagacgtttgaaattcaagtgtttgcggttcatctca 697  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  2710809 tataactaataattgatagtttatatttgaaaagctagaccgttgaaattcaagtgtttgcggttcttctca 2710738  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 17862074 - 17862133
Alignment:
Q  246 tctttataaactctagtcagactttatttttaatataagtgggacttgattttttcaata 305  Q
    ||||||||||||||||||||||||||| |||||||||   | |||||| |||||||||||    
T  17862074 tctttataaactctagtcagactttatctttaatatatacgagacttggttttttcaata 17862133  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 30531840 - 30531893
Alignment:
Q  246 tctttataaactctagtcagactttatttttaatataagtgggacttgattttt 299  Q
    ||||||||||||||||| |||| |||| ||||||||| |||||||||| |||||    
T  30531840 tctttataaactctagtaagaccttatctttaatataggtgggacttggttttt 30531893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 15735426 - 15735485
Alignment:
Q  246 tctttataaactctagtcagactttatttttaatataagtgggacttgattttttcaata 305  Q
    |||||||||||||||||  ||| |||||||||| ||| |||| ||||| |||||||||||    
T  15735426 tctttataaactctagtgggaccttatttttaagatatgtggcacttggttttttcaata 15735485  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 33787221 - 33787273
Alignment:
Q  245 atctttataaactctagtcagactttatttttaatataagtgggacttgatttt 298  Q
    |||||||||||||||||||| | |||||||||||| || |||||| ||||||||    
T  33787221 atctttataaactctagtca-aatttatttttaatctatgtgggatttgatttt 33787273  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 42440867 - 42440806
Alignment:
Q  246 tctttataaactctagtcagactttatttttaatataagtgggacttgattttttcaatagc 307  Q
    |||||||||||||||||| ||| |||| |||||| || | |||||||| ||||| |||||||    
T  42440867 tctttataaactctagtcggaccttatctttaatttatgggggacttggtttttccaatagc 42440806  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 1580949 - 1580890
Alignment:
Q  246 tctttataaactctagtcagactttatttttaatataagtgggacttgattttttcaata 305  Q
    |||||||||||||||||  ||| |||||||||| ||| |||| ||||| |||||||||||    
T  1580949 tctttataaactctagtgggaccttatttttaagatatgtggcacttggttttttcaata 1580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 565 - 663
Target Start/End: Complemental strand, 22708210 - 22708112
Alignment:
Q  565 atactaaggctctgattagtaaaattaagttataacttagatgatagttgaaaagctagtttataactaataattgatagtttatatttgaaaagctag 663  Q
    |||||||||||||| || |||||| |||| |||||  ||| |||||| ||||||||||| | || ||| |||  |||||| |||||  |||||||||||    
T  22708210 atactaaggctctgtttggtaaaaataagctataagctagctgatagctgaaaagctagctgatgactgatagctgatagcttatagctgaaaagctag 22708112  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 629
Target Start/End: Original strand, 29050541 - 29050587
Alignment:
Q  583 gtaaaattaagttataacttagatgatagttgaaaagctagtttata 629  Q
    |||||| |||||||||| ||||||||||| ||||||||||| |||||    
T  29050541 gtaaaaataagttataagttagatgatagctgaaaagctagcttata 29050587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 40675524 - 40675466
Alignment:
Q  571 aggctctgattagtaaaattaagttataacttagatgatagttgaaaagctagtttata 629  Q
    |||||||| |||||||||  ||||||||| |||| ||||||||||||| |||| |||||    
T  40675524 aggctctgtttagtaaaaaaaagttataagttagctgatagttgaaaaactagcttata 40675466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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