View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_high_22 (Length: 286)
Name: NF0370_high_22
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 9527612 - 9527829
Alignment:
| Q |
1 |
tttaattactttaccattaatagtgacagtcctagtttgaaattcaacaccaatagttgactttgagtcaaagcaaaactcattctttgaaaaccttgat |
100 |
Q |
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| T |
9527612 |
tttaattactttaccattaatagtgacagtcctagtttgaaattcaacaccaatagttgactttgagtcaaagcaaaactcattctttgaaaaccttgat |
9527711 |
T |
|
| Q |
101 |
agtatttgagtctttcctactgctgagtcaccaatgacaacaaccttaaacacataatctattttctcgtccatatcataatctattttcttgtgtccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9527712 |
agtatttgagtctttcctactgctgagtcaccaatgacaacaaccttaaacacataatctattttctcttccatatcataatctattttcttgtgtccat |
9527811 |
T |
|
| Q |
201 |
tttcttgcttcatctcac |
218 |
Q |
| |
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||||||||||| |||||| |
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| T |
9527812 |
tttcttgcttcttctcac |
9527829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 48931851 - 48931694
Alignment:
| Q |
10 |
tttaccattaatagtgacagtcctagtttgaaattcaacaccaatagttgactttgagtcaaagcaaaactcattctttgaaaaccttgatagtatttga |
109 |
Q |
| |
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|||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| ||||||||||||| ||||||||| || |||||| |
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| T |
48931851 |
tttaccattaattgtgacagttctagtctgaaattcaactccaatggttgattttgagtcaaagcagaactcattctttgcaaaccttgacagcatttga |
48931752 |
T |
|
| Q |
110 |
gtctttcctactgctgagtcaccaatgacaacaaccttaaacacataatctattttct |
167 |
Q |
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|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
48931751 |
gtctttcctactgccgagtcaccaatcacaaccaccttaaacacataatctattttct |
48931694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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