View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0370_high_28 (Length: 264)

Name: NF0370_high_28
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0370_high_28
NF0370_high_28
[»] chr4 (15 HSPs)
chr4 (8-235)||(27556812-27557039)
chr4 (160-235)||(27503424-27503499)
chr4 (158-237)||(27514390-27514469)
chr4 (41-120)||(27559689-27559768)
chr4 (161-235)||(27489610-27489684)
chr4 (158-228)||(27524030-27524100)
chr4 (158-235)||(27468901-27468978)
chr4 (165-229)||(27497858-27497922)
chr4 (158-235)||(27508407-27508484)
chr4 (160-204)||(27476133-27476177)
chr4 (158-212)||(27486462-27486516)
chr4 (158-200)||(27506280-27506322)
chr4 (158-233)||(27554106-27554180)
chr4 (158-224)||(27431871-27431936)
chr4 (158-200)||(27479402-27479444)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 27556812 - 27557039
Alignment:
Q  8 aaacaaaggccaatgagatgtcacttggtattgtttaattatatcaaggattacttcacacttcaaaactcatgccaacttagattcccctttagaaata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27556812 aaacaaaggccaatgagatgtcacttggtattgtttaattatatcaaggattacttcacacttcaaaactcatgccaacttagattcccctttagaaata 27556911  T
Q  108 gactttacaaccaattcttaaaattgtagaccaccctttcaagtgcaacctcataattttgtaaacatgctttagacatgttttcttcattatgatagtg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27556912 gactttacaaccaattcttaaaattgtagaccaccctttcaagtgcaacctcataattttgtaaacatgctttagacatgttttcttcattatgatagtg 27557011  T
Q  208 ttgatttctagctggtaagtgattataa 235  Q
    |||||||| |||||||||||||||||||    
T  27557012 ttgatttccagctggtaagtgattataa 27557039  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 27503499 - 27503424
Alignment:
Q  160 ataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataa 235  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||| ||||||| |||||    
T  27503499 ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtccagctgataagtgactataa 27503424  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 27514469 - 27514390
Alignment:
Q  158 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataatg 237  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |||| || |||| |||||||| |||||||    
T  27514469 tcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtccagctagtaagtgactataatg 27514390  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 27559689 - 27559768
Alignment:
Q  41 tttaattatatcaaggattacttcacacttcaaaactcatgccaacttagattcccctttagaaatagactttacaacca 120  Q
    ||||||||||| |||| |||||||| |||| |||||||||||||||| || |||||||||||||| ||||||||||||||    
T  27559689 tttaattatataaagggttacttcagacttaaaaactcatgccaactcagtttcccctttagaaagagactttacaacca 27559768  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 27489684 - 27489610
Alignment:
Q  161 taattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataa 235  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| ||| || ||||||| |||||||||||    
T  27489684 taattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtccagctggttagtgattataa 27489610  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 27524100 - 27524030
Alignment:
Q  158 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtg 228  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||| || |||| || ||||||||||||    
T  27524100 tcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtg 27524030  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 27468901 - 27468978
Alignment:
Q  158 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataa 235  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||  ||| |  ||||||||||||| |||||    
T  27468901 tcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatgtgaagctggtaagtgactataa 27468978  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 27497858 - 27497922
Alignment:
Q  165 tttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtga 229  Q
    |||||||||| ||||  ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  27497858 tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtctagctggtaagtga 27497922  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 27508484 - 27508407
Alignment:
Q  158 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataa 235  Q
    |||||||||| ||||||||||  |||||||||||||||||||||| | || |||| || |||| |||||||| |||||    
T  27508484 tcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctagtaagtgactataa 27508407  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 27476133 - 27476177
Alignment:
Q  160 ataattttgtaaacatgctttagacatgttttcttcattatgata 204  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  27476133 ataattttgtaagcatgcttcagacatgttttcttcattatgata 27476177  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 27486462 - 27486516
Alignment:
Q  158 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgat 212  Q
    |||||||| |||||||||| || |||||||||||||||||||| | |||||||||    
T  27486462 tcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgat 27486516  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 27506322 - 27506280
Alignment:
Q  158 tcataattttgtaaacatgctttagacatgttttcttcattat 200  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  27506322 tcataattttgtaaacatgtttcagacatgttttcttcattat 27506280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 27554106 - 27554180
Alignment:
Q  158 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattat 233  Q
    ||||||||||| |||||||  | |||||||||| ||||||| ||||| ||||||| || ||||||||||| |||||    
T  27554106 tcataattttgcaaacatgtctaagacatgttt-cttcattttgataatgttgatctccagctggtaagttattat 27554180  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 27431936 - 27431871
Alignment:
Q  158 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggta 224  Q
    |||||||||||||||||||| ||| ||||| |||||||||  ||||| ||||||| || ||||||||    
T  27431936 tcataattttgtaaacatgcattatacatg-tttcttcatcttgataatgttgatgtccagctggta 27431871  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 27479402 - 27479444
Alignment:
Q  158 tcataattttgtaaacatgctttagacatgttttcttcattat 200  Q
    |||||||| |||||||||| || ||||||||||||||||||||    
T  27479402 tcataattgtgtaaacatgtttcagacatgttttcttcattat 27479444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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