View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_high_33 (Length: 251)
Name: NF0370_high_33
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 889753 - 889517
Alignment:
| Q |
1 |
atttttgaattctcaaatatgtcaaaaatacactatcgaaagtgcgttttcgatattgtattttcaaagtgtacttctcgtaagtaagtcgacggagaga |
100 |
Q |
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| T |
889753 |
atttttgaattctcaaatatgtcaaaaatacactatcgaaagtgcattttcgatattgtattttcaaagtgtactttccgtaagt----cgacggagaga |
889658 |
T |
|
| Q |
101 |
ct-gagaaataatctaatgataagacctatcaagtagtagtgttgtttttcattttaccacttgcatgtgtgtctatatatat----gtgtgtgtgaaga |
195 |
Q |
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|| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
889657 |
ctagagaaataatctaatcataagacctact------tagtgttgtttttcattttaccacttgcatgtgtgtctatatatatatatgtgtgtgtgaaga |
889564 |
T |
|
| Q |
196 |
gagatacaaagagatatcacaattattcttctcagtccctctctgtg |
242 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
889563 |
gagatgcaaagagatatcacaattattcttctcagtccctctctgtg |
889517 |
T |
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