View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_high_37 (Length: 227)
Name: NF0370_high_37
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_high_37 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 46 - 227
Target Start/End: Original strand, 2294494 - 2294675
Alignment:
| Q |
46 |
cacatatgttattgttctttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtcaagatactttcattgtaaaaatat |
145 |
Q |
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| T |
2294494 |
cacatatgttattgttctttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtcaagatactttcattgtaaaaatat |
2294593 |
T |
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| Q |
146 |
atgatctttgttgtagtaatattgaagttggtttattttgttaatctgtttggtcttggcggttatagattatgtttcctcc |
227 |
Q |
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| T |
2294594 |
atgatctttgttgtagtaatattgaagttggtttattttgttaatctgtttggtcttggcggttatagattatgtttcctcc |
2294675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 2321812 - 2321932
Alignment:
| Q |
64 |
ttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtcaagatactttcattgta-aaaatatatgatctttgttgtagt |
162 |
Q |
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||||||||||||||||||| |||||||| ||||| | | |||||||||||||||||||||||||||||| |||| |||| |||||||| ||||| | || |
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| T |
2321812 |
ttcttatatatcttgtttcttgtataaaataaaacat-gtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatc-ttgtttttgt |
2321909 |
T |
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| Q |
163 |
aatattgaagttggtttattttg |
185 |
Q |
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| T |
2321910 |
aatatcaaagttgttttattttg |
2321932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 2321971 - 2322009
Alignment:
| Q |
170 |
aagttggtttattttgttaatctgtttggtcttggcggt |
208 |
Q |
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| T |
2321971 |
aagttggtttattttgttaatctgtttggtcttgacggt |
2322009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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