View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_low_1 (Length: 774)
Name: NF0370_low_1
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 30 - 644
Target Start/End: Complemental strand, 36691452 - 36690838
Alignment:
| Q |
30 |
aatataagctccgagtgtatcttgctagggaacacttttgagccgaaaatatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaaca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691452 |
aatataagctccgagtgtatcttgctagggaacacttttgagcccaaaatatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaaca |
36691353 |
T |
|
| Q |
130 |
taggatctggaaagaaggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaagtaatac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691352 |
taggatctggaaagaaggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaagtaatac |
36691253 |
T |
|
| Q |
230 |
taatgttccgtttgcgacctacacatattccaatcctatgaatctgttggaggaccattttgggttctatgatgcagtgaatgaatctctaaacaagata |
329 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691252 |
taatgttccgtttgcgacctacacatatcctaatcctatgaatctgttggaggaccattttgggttctatgatgcagtgaatgaatctctaaacaagata |
36691153 |
T |
|
| Q |
330 |
gaatttgaagatgaggtctctactcttcttagaattgcatgtgattgtattcatcctttgtttgataaaaggcctactatgcttgaggtgtacagcaaga |
429 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691152 |
gaatttgaagatgaggtctctgctcttcttagaattgcatgtgattgtattcatcctttgtttgataaaaggcctactatgcttgaggtgtacagcaaga |
36691053 |
T |
|
| Q |
430 |
tgggcaacatatgggagagagatgatatttgtgaagatcctgacctcttatcggtcgatttttgaaactcctacgacaaatagagaccagtatacttatt |
529 |
Q |
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| T |
36691052 |
tgggcaacatatgggagagagatgatatttgtgaagatcctgacctcttatcggtcgatttttgaaactcctacgacaaatagagaccagtatacttatc |
36690953 |
T |
|
| Q |
530 |
aattaacctacctggtaggtgtcatgtatccaaacatatttgtaagatcctgttgtattgatccccttatcgtgccgaggttggtgttcctccactcaag |
629 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36690952 |
aattaacctatctggtaggtgtcatgtatccaaacatatttgtaagatcctgttgtattgatccccttatcgtgccgaggttggtgttcctccactcaag |
36690853 |
T |
|
| Q |
630 |
tggaatgacaccatt |
644 |
Q |
| |
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||||||||||||||| |
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| T |
36690852 |
tggaatgacaccatt |
36690838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 45 - 478
Target Start/End: Complemental strand, 23655121 - 23654688
Alignment:
| Q |
45 |
tgtatcttgctagggaacacttttgagccgaaaatatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaacataggatctggaaaga |
144 |
Q |
| |
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||||||||| ||||||| | ||||||||| || ||||||||||| |||||| ||||||||||||||||||| || | ||||||||||| || |||| |
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| T |
23655121 |
tgtatcttgttagggaaaaattttgagccaaagatatccaatttcggagggatcatgtttatgaataatgatctggaaaaaaacataggacttgagaaga |
23655022 |
T |
|
| Q |
145 |
aggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaagtaatactaatgttccgtttgc |
244 |
Q |
| |
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||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| | ||| | ||| | ||| || ||||| |||| |
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| T |
23655021 |
aggatgtttctgactttggttgtttgctttttgagctgattaatgggaataaatttggggaaatacatgaatcttttaacaatgttacagttccttttgt |
23654922 |
T |
|
| Q |
245 |
gacctacacatattccaatcctatgaatctgttgg---aggaccattttgggttctatgatgcagtgaatgaatctctaaacaagatagaatttgaagat |
341 |
Q |
| |
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||| || | | |||| | ||||| |||||| | |||| || ||| |||| |||||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
23654921 |
gactta------tccgaatcatgtgaatatgttgggagaagacccttctggattctgtgatgcagtggatgaatatctaaacaagatagaatttaaagat |
23654828 |
T |
|
| Q |
342 |
gagg---tctctactcttcttagaattgcatgtgattgtattcatcctttgtttgataaaaggcctactatgcttgaggtgtacagcaagatgggcaaca |
438 |
Q |
| |
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|||| | ||||||||||||||| ||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||| |
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| T |
23654827 |
gaggaggtatctactcttcttagagttgcacgtgaatgtgttcatcctttgtttgaacaaaggcctactatgcttgaggtgtataacaagatatgcaaca |
23654728 |
T |
|
| Q |
439 |
tatgggagagagatgatatttgtgaagatcctgacctctt |
478 |
Q |
| |
|
|| |||| |||||| |||||||||||| || ||||||| |
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| T |
23654727 |
taggggaaagagatagaatttgtgaagatgctaacctctt |
23654688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 45 - 478
Target Start/End: Original strand, 23803449 - 23803882
Alignment:
| Q |
45 |
tgtatcttgctagggaacacttttgagccgaaaatatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaacataggatctggaaaga |
144 |
Q |
| |
|
||||||||| ||||||| | ||||||||| || ||||||||||| |||||| ||||||||||||||||||| || | ||||||||||| || |||| |
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| T |
23803449 |
tgtatcttgttagggaaaaattttgagccaaagatatccaatttcggagggatcatgtttatgaataatgatctggaaaaaaacataggacttgagaaga |
23803548 |
T |
|
| Q |
145 |
aggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaagtaatactaatgttccgtttgc |
244 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| | ||| | ||| | ||| || ||||| |||| |
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| T |
23803549 |
aggatgtttctgactttggttgtttgctttttgagctgattaatgggaataaatttggggaaatacatgaatcttttaacaatgttacagttccttttgt |
23803648 |
T |
|
| Q |
245 |
gacctacacatattccaatcctatgaatctgttgg---aggaccattttgggttctatgatgcagtgaatgaatctctaaacaagatagaatttgaagat |
341 |
Q |
| |
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||| || | | |||| | ||||| |||||| | |||| || ||| |||| |||||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
23803649 |
gactta------tccgaatcatgtgaatatgttgggagaagacccttctggattctgtgatgcagtggatgaatatctaaacaagatagaatttaaagat |
23803742 |
T |
|
| Q |
342 |
gagg---tctctactcttcttagaattgcatgtgattgtattcatcctttgtttgataaaaggcctactatgcttgaggtgtacagcaagatgggcaaca |
438 |
Q |
| |
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|||| | ||||||||||||||| ||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||| |
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| T |
23803743 |
gaggaggtatctactcttcttagagttgcacgtgaatgtgttcatcctttgtttgaacaaaggcctactatgcttgaggtgtataacaagatatgcaaca |
23803842 |
T |
|
| Q |
439 |
tatgggagagagatgatatttgtgaagatcctgacctctt |
478 |
Q |
| |
|
|| |||| |||||| |||||||||||| || ||||||| |
|
|
| T |
23803843 |
taggggaaagagatagaatttgtgaagatgctaacctctt |
23803882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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