View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0370_low_11 (Length: 438)

Name: NF0370_low_11
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0370_low_11
NF0370_low_11
[»] chr4 (22 HSPs)
chr4 (24-149)||(39292080-39292209)
chr4 (253-314)||(36203229-36203290)
chr4 (392-436)||(37175798-37175842)
chr4 (392-436)||(39292309-39292353)
chr4 (253-304)||(20096287-20096338)
chr4 (254-304)||(13121538-13121588)
chr4 (251-309)||(13276120-13276178)
chr4 (265-303)||(18541506-18541544)
chr4 (254-304)||(18635524-18635574)
chr4 (253-299)||(22164291-22164337)
chr4 (253-299)||(29737666-29737712)
chr4 (254-296)||(33024150-33024192)
chr4 (253-299)||(43722758-43722804)
chr4 (251-308)||(8494978-8495035)
chr4 (251-316)||(11286786-11286851)
chr4 (259-304)||(38374956-38375001)
chr4 (251-308)||(38812862-38812919)
chr4 (259-303)||(6460096-6460140)
chr4 (252-304)||(7248328-7248380)
chr4 (251-299)||(21465602-21465650)
chr4 (252-304)||(30051884-30051936)
chr4 (253-309)||(36490561-36490617)
[»] chr1 (26 HSPs)
chr1 (252-299)||(22388197-22388244)
chr1 (252-299)||(41573291-41573338)
chr1 (252-311)||(43840335-43840394)
chr1 (253-303)||(41998344-41998394)
chr1 (254-307)||(2884462-2884515)
chr1 (251-303)||(18091194-18091247)
chr1 (254-315)||(27853349-27853410)
chr1 (255-304)||(44220982-44221031)
chr1 (260-316)||(49868011-49868067)
chr1 (253-316)||(7732415-7732478)
chr1 (253-304)||(16033467-16033518)
chr1 (252-299)||(29701342-29701389)
chr1 (257-304)||(41974758-41974805)
chr1 (253-299)||(30678835-30678881)
chr1 (252-310)||(41032923-41032981)
chr1 (254-304)||(44641521-44641571)
chr1 (258-299)||(9116894-9116935)
chr1 (251-316)||(11014223-11014288)
chr1 (255-316)||(23772282-23772343)
chr1 (283-316)||(27687617-27687650)
chr1 (252-309)||(41973247-41973304)
chr1 (259-299)||(10292935-10292975)
chr1 (255-303)||(18398633-18398681)
chr1 (251-299)||(29935974-29936022)
chr1 (252-304)||(36467042-36467094)
chr1 (251-299)||(44365970-44366018)
[»] chr2 (31 HSPs)
chr2 (251-309)||(11931596-11931654)
chr2 (253-304)||(29896311-29896362)
chr2 (257-307)||(1238159-1238209)
chr2 (251-304)||(3197096-3197149)
chr2 (262-299)||(3904204-3904241)
chr2 (251-299)||(28277698-28277746)
chr2 (251-307)||(45032684-45032740)
chr2 (251-298)||(6238587-6238634)
chr2 (273-316)||(7262819-7262862)
chr2 (253-304)||(27244650-27244701)
chr2 (257-304)||(34364512-34364559)
chr2 (273-316)||(37830726-37830769)
chr2 (254-304)||(6723094-6723144)
chr2 (255-309)||(7537105-7537159)
chr2 (251-309)||(9517021-9517079)
chr2 (254-300)||(43356654-43356700)
chr2 (258-303)||(13922650-13922695)
chr2 (279-316)||(30045472-30045509)
chr2 (279-316)||(30050635-30050672)
chr2 (279-316)||(30141679-30141716)
chr2 (258-307)||(30929059-30929108)
chr2 (251-311)||(7206116-7206176)
chr2 (266-302)||(11265143-11265179)
chr2 (406-438)||(17897870-17897902)
chr2 (252-304)||(27935048-27935100)
chr2 (273-309)||(30089062-30089098)
chr2 (273-309)||(30125666-30125702)
chr2 (257-309)||(31815899-31815951)
chr2 (253-309)||(32986005-32986061)
chr2 (253-309)||(33063979-33064035)
chr2 (273-309)||(39068720-39068756)
[»] chr8 (24 HSPs)
chr8 (251-304)||(7553670-7553723)
chr8 (273-316)||(24696011-24696054)
chr8 (251-309)||(26886054-26886112)
chr8 (393-438)||(3036536-3036581)
chr8 (253-309)||(8837913-8837969)
chr8 (253-304)||(6109162-6109213)
chr8 (254-309)||(6447183-6447238)
chr8 (252-311)||(13575281-13575340)
chr8 (257-304)||(33482166-33482213)
chr8 (253-307)||(8687859-8687913)
chr8 (254-303)||(8982561-8982610)
chr8 (259-316)||(10601762-10601819)
chr8 (251-304)||(14303156-14303209)
chr8 (254-299)||(32223901-32223946)
chr8 (251-304)||(33620889-33620942)
chr8 (251-299)||(1230683-1230731)
chr8 (251-299)||(1243763-1243811)
chr8 (251-299)||(1254463-1254511)
chr8 (261-309)||(7968952-7969000)
chr8 (254-310)||(11708980-11709036)
chr8 (276-304)||(12938944-12938972)
chr8 (273-309)||(22948093-22948129)
chr8 (252-304)||(32555246-32555298)
chr8 (252-304)||(33445562-33445614)
[»] chr7 (21 HSPs)
chr7 (253-316)||(964746-964809)
chr7 (258-309)||(1285081-1285132)
chr7 (251-316)||(3584195-3584260)
chr7 (250-299)||(22267571-22267620)
chr7 (393-438)||(24934749-24934794)
chr7 (257-305)||(3948051-3948099)
chr7 (252-304)||(35222916-35222968)
chr7 (253-309)||(42829246-42829302)
chr7 (251-294)||(20762831-20762874)
chr7 (253-304)||(30857241-30857292)
chr7 (253-315)||(1399155-1399217)
chr7 (273-307)||(28479870-28479904)
chr7 (254-315)||(5352323-5352384)
chr7 (273-310)||(37307885-37307922)
chr7 (252-316)||(8237637-8237701)
chr7 (255-307)||(9819563-9819615)
chr7 (255-307)||(10721488-10721540)
chr7 (253-309)||(19599138-19599194)
chr7 (259-299)||(29461843-29461883)
chr7 (255-311)||(41527555-41527611)
chr7 (252-304)||(43681007-43681059)
[»] chr6 (16 HSPs)
chr6 (273-316)||(2692228-2692271)
chr6 (254-298)||(7927694-7927738)
chr6 (253-304)||(12412270-12412321)
chr6 (254-316)||(8809300-8809362)
chr6 (254-300)||(12336347-12336393)
chr6 (254-296)||(21884981-21885023)
chr6 (392-438)||(28478665-28478711)
chr6 (392-438)||(29791120-29791166)
chr6 (253-306)||(2445292-2445345)
chr6 (253-306)||(3373396-3373449)
chr6 (251-316)||(31971520-31971585)
chr6 (253-297)||(11520583-11520627)
chr6 (256-304)||(14552333-14552381)
chr6 (252-304)||(15291707-15291759)
chr6 (252-304)||(24373727-24373779)
chr6 (273-309)||(28231437-28231473)
[»] chr5 (20 HSPs)
chr5 (253-304)||(40445976-40446027)
chr5 (251-316)||(1082224-1082289)
chr5 (249-309)||(8545001-8545061)
chr5 (251-299)||(10531531-10531579)
chr5 (257-311)||(17046331-17046385)
chr5 (253-299)||(28447486-28447532)
chr5 (246-304)||(34436837-34436895)
chr5 (254-299)||(4432110-4432155)
chr5 (271-304)||(7861018-7861051)
chr5 (251-316)||(8885246-8885311)
chr5 (254-303)||(42663222-42663271)
chr5 (392-436)||(2523798-2523842)
chr5 (259-299)||(2642785-2642825)
chr5 (258-306)||(6237734-6237782)
chr5 (252-304)||(10515545-10515597)
chr5 (283-315)||(13484542-13484574)
chr5 (266-306)||(14124307-14124347)
chr5 (259-303)||(14869991-14870035)
chr5 (255-299)||(17861974-17862018)
chr5 (392-436)||(34903400-34903444)
[»] chr3 (23 HSPs)
chr3 (252-299)||(7827500-7827547)
chr3 (252-299)||(7829888-7829935)
chr3 (253-304)||(32753821-32753872)
chr3 (248-303)||(48924337-48924392)
chr3 (258-304)||(48517669-48517715)
chr3 (259-304)||(12976619-12976664)
chr3 (252-304)||(28093346-28093398)
chr3 (251-309)||(7738660-7738718)
chr3 (259-309)||(10922320-10922370)
chr3 (261-311)||(39869817-39869867)
chr3 (255-309)||(46226089-46226143)
chr3 (254-299)||(7464513-7464558)
chr3 (255-304)||(8139710-8139759)
chr3 (251-316)||(9598430-9598495)
chr3 (250-299)||(22462302-22462351)
chr3 (250-299)||(23332640-23332689)
chr3 (251-304)||(28052399-28052452)
chr3 (254-307)||(38387966-38388019)
chr3 (252-304)||(7824799-7824851)
chr3 (273-309)||(24145411-24145447)
chr3 (259-307)||(35126283-35126331)
chr3 (255-299)||(37921020-37921064)
chr3 (252-304)||(41168155-41168207)
[»] scaffold0160 (1 HSPs)
scaffold0160 (253-316)||(22904-22967)
[»] scaffold0143 (1 HSPs)
scaffold0143 (257-304)||(4463-4510)
[»] scaffold0016 (1 HSPs)
scaffold0016 (254-304)||(99031-99081)
[»] scaffold0045 (2 HSPs)
scaffold0045 (254-303)||(63856-63905)
scaffold0045 (254-303)||(71188-71237)
[»] scaffold0086 (1 HSPs)
scaffold0086 (252-304)||(1599-1651)
[»] scaffold0038 (1 HSPs)
scaffold0038 (273-309)||(31934-31970)
[»] scaffold0008 (1 HSPs)
scaffold0008 (253-297)||(119562-119606)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 39292080 - 39292209
Alignment:
Q  24 tcatcaccgggtgtagccatcatatacctgttttacaacatcaatcgtgtatgtc----attaattaattaatacatctttatgtgtaaactttcaagat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| |||||    
T  39292080 tcatcaccgggtgtagccatcatatacctgttttacaacatcaatcgtgtatgtcattaattaattaattaatacatctttatgtgtaaactttgaagat 39292179  T
Q  120 ttgagtaattgagattcatttaaaacatta 149  Q
     |||||||||||||||||||||||||||||    
T  39292180 atgagtaattgagattcatttaaaacatta 39292209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 36203229 - 36203290
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagatt 314  Q
    |||||||||||| |||  | |||||||| |||||||||||||||||| |||| |||||||||    
T  36203229 tgtcctcgtgagcttagctcagttgataaggacaatgcataatatatgcaaggtccgagatt 36203290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 37175842 - 37175798
Alignment:
Q  392 cttaaagtagcaactttatcttaaaaattatgcattcaacatatt 436  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  37175842 cttaaagtagcaactttatcttggaaattatgcattcaacttatt 37175798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 39292309 - 39292353
Alignment:
Q  392 cttaaagtagcaactttatcttaaaaattatgcattcaacatatt 436  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  39292309 cttaaagtagcaactttatcttggaaattatgcattcaacttatt 39292353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 20096338 - 20096287
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||||||| | ||||| |||||| |||||||||||||| ||||    
T  20096338 tgtcctcgtgagtttaactcagttggtagggataatgcataatatatgcaag 20096287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 13121538 - 13121588
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||| |||  ||||||| ||||||||||||||||||||| ||||    
T  13121538 gtcctcgtgagcttagcttagttggtagggacaatgcataatatatgcaag 13121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 13276120 - 13276178
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||||||| |||| | | ||| ||||||||||||||||||||| |||| ||||    
T  13276120 tttgtcctcgtgagcttaactcaattggtagggacaatgcataatatatgcaaggtccg 13276178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 18541506 - 18541544
Alignment:
Q  265 tttaatttagttgatagggacaatgcataatatatacaa 303  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  18541506 tttaatttagttgatagaaacaatgcataatatatacaa 18541544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 18635524 - 18635574
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||| |||||| |||| | |||||||| |||||||||||||||||||||||    
T  18635524 gtccccgtgagcttaactcagttgataaggacaatgcataatatatacaag 18635574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 22164337 - 22164291
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||||  ||||||| |||| ||||||||||||||||    
T  22164337 tgtcctcgtgagtttagcttagttggtaggaacaatgcataatatat 22164291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 29737666 - 29737712
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||| ||||| |||||||||||| |||| ||||||||||||||||    
T  29737666 tgtccttgtgagcttaatttagttgctaggaacaatgcataatatat 29737712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 33024150 - 33024192
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataata 296  Q
    |||||||||||||||| ||||||| || |||||||||||||||    
T  33024150 gtcctcgtgagtttaacttagttggtatggacaatgcataata 33024192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 43722758 - 43722804
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||||| | ||||| || ||||||||||||||||||    
T  43722758 tgtcctcgtgagtttaactcagttggtatggacaatgcataatatat 43722804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 8494978 - 8495035
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatcc 308  Q
    |||||||||||||  |||  | ||||| ||||||||||||||||||||| ||||||||    
T  8494978 tttgtcctcgtgaacttagctcagttggtagggacaatgcataatatatgcaagatcc 8495035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 11286851 - 11286786
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    ||||||||| |||| ||| || ||||| ||| ||||||||||||||||| |||| || ||||||||    
T  11286851 tttgtcctcctgagcttagttcagttggtagagacaatgcataatatatgcaaggtctgagattca 11286786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 38374956 - 38375001
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||| |||| ||||||| ||||||||||||||||||||| ||||    
T  38374956 cgtgagcttaacttagttggtagggacaatgcataatatatgcaag 38375001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 38812919 - 38812862
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatcc 308  Q
    ||||| ||||||||||||  | ||| | ||||||||||||||||||||| ||||||||    
T  38812919 tttgttctcgtgagtttagctcagtcggtagggacaatgcataatatatgcaagatcc 38812862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 6460140 - 6460096
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    ||||||||||| | |||| |||| |||||||||||||||||||||    
T  6460140 cgtgagtttaactcagttaatagagacaatgcataatatatacaa 6460096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 7248328 - 7248380
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||| |||||||||||| | ||||||| |||||||||||||| |||| ||||    
T  7248328 ttgtcatcgtgagtttaactcagttgattgggacaatgcataaaatatgcaag 7248380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 21465602 - 21465650
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||||||| | ||||  || ||||||||||||||||||    
T  21465602 tttgtcctcgtgagtttaactcagttagtaaggacaatgcataatatat 21465650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 30051936 - 30051884
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||| ||| || ||||| || |||||||||||||||||| ||||    
T  30051936 ttgtcctcgtgagcttagttcagttgttatggacaatgcataatatatgcaag 30051884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 36490561 - 36490617
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||| ||||||| |||| ||||||| || |||||||||||||| ||| |||||||||    
T  36490561 tgtcatcgtgagcttaacttagttggtatggacaatgcataatgtatgcaagatccg 36490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 22388244 - 22388197
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  22388244 ttgtcctcgtaagtttaacttagttgatagggacaatgcataatatat 22388197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 41573338 - 41573291
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||||    
T  41573338 ttgtcctcgtgagtttaactcagttggtagggacaatgcataatatat 41573291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 43840394 - 43840335
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 311  Q
    |||||||||||||||||| | |||||||| ||||||||||||| ||||  ||||||||||    
T  43840394 ttgtcctcgtgagtttaactcagttgatatggacaatgcataaaatatgtaagatccgag 43840335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 41998344 - 41998394
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    |||||||||||| |||| | |||||||||||||||| ||||||||||||||    
T  41998344 tgtcctcgtgagattaactcagttgatagggacaattcataatatatacaa 41998394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 2884515 - 2884462
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 307  Q
    ||||||||||  |||| | |||||||| ||||||||||||||||||||||||||    
T  2884515 gtcctcgtgaccttaactcagttgatatggacaatgcataatatatacaagatc 2884462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 18091194 - 18091247
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcat-aatatatacaa 303  Q
    |||||||||||||| |||| | |||||||||||||||||||| |||||||||||    
T  18091194 tttgtcctcgtgagcttaactcagttgatagggacaatgcataaatatatacaa 18091247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 27853349 - 27853410
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattc 315  Q
    ||||||||||| |||| | ||||| || | |||||||||||||||||||||||||| |||||    
T  27853349 gtcctcgtgagcttaactcagttggtatgaacaatgcataatatatacaagatccgggattc 27853410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 44220982 - 44221031
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||| |||| ||||||||||| ||||||||| ||||||||||||    
T  44220982 tcctcgtgagcttaacttagttgatagagacaatgcacaatatatacaag 44221031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 49868011 - 49868067
Alignment:
Q  260 gtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||||| | |||||||| ||| |||||||||||||| |||| |||||||||||    
T  49868011 gtgagtttaactcagttgatatggataatgcataatatatgcaaggtccgagattca 49868067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 7732415 - 7732478
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    ||||||||||||||||  | |||||||  ||| |||||||||||||| ||||||||| ||||||    
T  7732415 tgtcctcgtgagtttagctcagttgatttggataatgcataatatatccaagatccgggattca 7732478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 16033518 - 16033467
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||| || | | ||||||||||||||||||||||||||| ||||    
T  16033518 tgtcctcgtgagcttgactcagttgatagggacaatgcataatatatgcaag 16033467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 29701389 - 29701342
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||| ||||||| |||| |||||||||| ||||||||||||||||||    
T  29701389 ttgtcttcgtgagcttaacttagttgatatggacaatgcataatatat 29701342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 41974758 - 41974805
Alignment:
Q  257 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||| || |||||||||||| |||||||||||||| ||||    
T  41974758 ctcgtgagtttagttcagttgatagggataatgcataatatatgcaag 41974805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 30678881 - 30678835
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||||||| |||| | ||||| |||||||||||||||||||||    
T  30678881 tgtcctcgtgagcttaactcagttggtagggacaatgcataatatat 30678835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 41032923 - 41032981
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccga 310  Q
    ||||||||||||| |||| | |||||||| | ||||||||||| ||||||||| |||||    
T  41032923 ttgtcctcgtgagcttaactcagttgatatgaacaatgcataaaatatacaaggtccga 41032981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 44641521 - 44641571
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||||||  | |||||||| |||||||||||||||||| ||||    
T  44641521 gtcctcgtgagtttagctcagttgatatggacaatgcataatatatgcaag 44641571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 9116935 - 9116894
Alignment:
Q  258 tcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||||||| | |||||||| ||||||||||||||||||    
T  9116935 tcgtgagtttaactcagttgatatggacaatgcataatatat 9116894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 11014223 - 11014288
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    ||||||||||||||||||  | ||||| ||| |||| |||||||||||| |||||| || ||||||    
T  11014223 tttgtcctcgtgagtttagctcagttggtagagacagtgcataatatatgcaagattcgggattca 11014288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 23772343 - 23772282
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    ||||||||| |||| || ||||  |||| |||||| ||||||||||||||||| ||||||||    
T  23772343 tcctcgtgaatttagttcagtttgtaggaacaatgtataatatatacaagatctgagattca 23772282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 316
Target Start/End: Complemental strand, 27687650 - 27687617
Alignment:
Q  283 gacaatgcataatatatacaagatccgagattca 316  Q
    |||||||||||||||||||||||| |||||||||    
T  27687650 gacaatgcataatatatacaagatacgagattca 27687617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 41973247 - 41973304
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||||||| ||| |||| ||| ||| ||||||||||||||||||||| |||| ||||    
T  41973247 ttgtcctcgcgagcttaacttaattggtagggacaatgcataatatatgcaaggtccg 41973304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 10292935 - 10292975
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||| |||| | |||||||||||||||||||||||||||    
T  10292935 cgtgagcttaactcagttgatagggacaatgcataatatat 10292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 18398633 - 18398681
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    ||||||||||||||||| ||||| || ||||||| ||||||||| ||||    
T  18398633 tcctcgtgagtttaattcagttggtaaggacaatacataatatagacaa 18398681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 29935974 - 29936022
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||| |||||||||| | ||||| || ||||||||||||||||||    
T  29935974 tttgtccttgtgagtttaactcagttggtatggacaatgcataatatat 29936022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 36467094 - 36467042
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||| ||||| |||||| | |||||| |||||||||||||||||| ||||    
T  36467094 ttgtccttgtgagcttaattcaattgatatggacaatgcataatatatgcaag 36467042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 44366018 - 44365970
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||||||| | ||||| |||| ||||| ||||||||||    
T  44366018 tttgtcctcgtgagtttaactcagttggtaggaacaatacataatatat 44365970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 11931596 - 11931654
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||||||| ||| |||| ||| ||||||||||||||||||||| |||||||||    
T  11931596 tttgtcctcgtgagcttagtttaattggtagggacaatgcataatatatgcaagatccg 11931654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 29896362 - 29896311
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||| ||||    
T  29896362 tgtcctcgtgagtttaattcagttgatagaaacaatgcataatatatgcaag 29896311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 1238159 - 1238209
Alignment:
Q  257 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 307  Q
    |||||||| |||| | | |||||||||||||||||||||||||||||||||    
T  1238159 ctcgtgagcttaactcaattgatagggacaatgcataatatatacaagatc 1238209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 3197149 - 3197096
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||||||||  | ||||| ||||||||||||||||||||| ||||    
T  3197149 tttgtcctcgtgagtttagctcagttggtagggacaatgcataatatatgcaag 3197096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 3904204 - 3904241
Alignment:
Q  262 gagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3904204 gagtttaacttagttgatagggacaatgcataatatat 3904241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 28277746 - 28277698
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||||||  ||||||| || ||||||||||||||||||    
T  28277746 tttgtcctcgtgagtttagcttagttggtaaggacaatgcataatatat 28277698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 45032684 - 45032740
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 307  Q
    |||||||||||||| |||  | ||||| ||||||||||||||||||||| |||||||    
T  45032684 tttgtcctcgtgagcttacctcagttggtagggacaatgcataatatatgcaagatc 45032740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 6238634 - 6238587
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatata 298  Q
    ||||||||||||||||||  ||| ||| ||||||||||||||||||||    
T  6238634 tttgtcctcgtgagtttagcttaattggtagggacaatgcataatata 6238587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 7262819 - 7262862
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||| ||||||||||||||||||||||||||  |||||||    
T  7262819 agttgatatggacaatgcataatatatacaagatcaaagattca 7262862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 27244650 - 27244701
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||| |||  | ||||||||||||||||||||||||||| ||||    
T  27244650 tgtcctcgtgagcttagctcagttgatagggacaatgcataatatatgcaag 27244701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 34364559 - 34364512
Alignment:
Q  257 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||| ||||||| |||| | |||||||||||||||||||    
T  34364559 ctcgtgagtttaacttagttggtaggaataatgcataatatatacaag 34364512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 37830726 - 37830769
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    ||||| |||||||||| ||||||||||||||||||| |||||||    
T  37830726 agttggtagggacaatacataatatatacaagatccaagattca 37830769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 6723144 - 6723094
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||||||| | |||||||| |||||||| ||||||||| ||||    
T  6723144 gtcctcgtgagtttaactcagttgatatggacaatgtataatatatgcaag 6723094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 7537105 - 7537159
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||| |||| | |||||||||| |||||||||||||||| |||| ||||    
T  7537105 tcctcgtgagattaactcagttgataggaacaatgcataatatatgcaaggtccg 7537159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 9517079 - 9517021
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||||||| |||  | ||||| || | ||||||||||||||||||||||||||    
T  9517079 tttgtcctcgtgagattagctcagttggtatgaacaatgcataatatatacaagatccg 9517021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 43356700 - 43356654
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatata 300  Q
    ||||| |||||||||  ||||||| ||||||||||||||||||||||    
T  43356700 gtcctagtgagtttatcttagttgttagggacaatgcataatatata 43356654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 13922695 - 13922650
Alignment:
Q  258 tcgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    ||||||| |||| | ||||| |||||||||||||||||||||||||    
T  13922695 tcgtgagcttaactcagttggtagggacaatgcataatatatacaa 13922650  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 30045472 - 30045509
Alignment:
Q  279 tagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||||||||||||||||||||| | |||||||||    
T  30045472 tagggacaatgcataatatatacaaggttcgagattca 30045509  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 30050635 - 30050672
Alignment:
Q  279 tagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||||||||||||||||||||| | |||||||||    
T  30050635 tagggacaatgcataatatatacaaggttcgagattca 30050672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 30141679 - 30141716
Alignment:
Q  279 tagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||||||||||||||||||||| | |||||||||    
T  30141679 tagggacaatgcataatatatacaaggttcgagattca 30141716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 30929108 - 30929059
Alignment:
Q  258 tcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 307  Q
    |||| ||||||| | |||||||| ||||||||||||||||||| ||||||    
T  30929108 tcgtaagtttaactcagttgatatggacaatgcataatatatataagatc 30929059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 7206116 - 7206176
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 311  Q
    |||||||||||||| |||  | ||||| ||| ||||||||||||||||| |||| ||||||    
T  7206116 tttgtcctcgtgagcttagctcagttggtagagacaatgcataatatatgcaaggtccgag 7206176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 11265179 - 11265143
Alignment:
Q  266 ttaatttagttgatagggacaatgcataatatataca 302  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  11265179 ttaacttagttgatagggacgatgcataatatataca 11265143  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 438
Target Start/End: Complemental strand, 17897902 - 17897870
Alignment:
Q  406 tttatcttaaaaattatgcattcaacatattaa 438  Q
    ||||||||||||||| |||||||||||||||||    
T  17897902 tttatcttaaaaattgtgcattcaacatattaa 17897870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 27935048 - 27935100
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||| |||||||||||| | ||||| ||||||||||||| ||||||| ||||    
T  27935048 ttgtcatcgtgagtttaactcagttggtagggacaatgcagaatatatgcaag 27935100  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 30089062 - 30089098
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  30089062 agttggtagggacaatgcataatatatacaaggtccg 30089098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 30125666 - 30125702
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  30125666 agttggtagggacaatgcataatatatacaaggtccg 30125702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 31815951 - 31815899
Alignment:
Q  257 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||| |||| | ||||| ||||||||||||||||||||| |||| ||||    
T  31815951 ctcgtgagcttaactcagttggtagggacaatgcataatatatgcaaggtccg 31815899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 32986005 - 32986061
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||||| ||||||||| | |||||||| | | |||| |||||||||||||||||||    
T  32986005 tgtcctcttgagtttaactcagttgatatgaaaaatgaataatatatacaagatccg 32986061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 33063979 - 33064035
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||||| |||  | |||||||| |||||||||||||||||| |||| ||||    
T  33063979 tgtcctcgtgagcttagctcagttgatatggacaatgcataatatatgcaaggtccg 33064035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 39068756 - 39068720
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||| |||||||||||||||||| |||||||||    
T  39068756 agttgataaggacaatgcataatatatgcaagatccg 39068720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 7553670 - 7553723
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||||| ||||    
T  7553670 tttgtcctcgtgagtttaactcagttggtagggacaatgcataatatatgcaag 7553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 24696054 - 24696011
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||| |||||||||||||||||| ||||||||||||||||    
T  24696054 agttgatatggacaatgcataatatatgcaagatccgagattca 24696011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 26886112 - 26886054
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||||||||||||||||| ||||||| || ||||||||||||| ||||  ||||||||    
T  26886112 tttgtcctcgtgagtttaacttagttggtatggacaatgcataaaatatgtaagatccg 26886054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 3036581 - 3036536
Alignment:
Q  393 ttaaagtagcaactttatcttaaaaattatgcattcaacatattaa 438  Q
    |||||||||||||||||||||||||||| || ||||||| ||||||    
T  3036581 ttaaagtagcaactttatcttaaaaattgtgtattcaacttattaa 3036536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 8837913 - 8837969
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||||  |||| |  ||||||||||||||||||||||||||||||| ||||    
T  8837913 tgtcctcgtgaacttaactcggttgatagggacaatgcataatatatacaaggtccg 8837969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 6109162 - 6109213
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||||||  | |||||||| ||||||||||||| |||||||||    
T  6109162 tgtcctcgtgagtttatatcagttgatatggacaatgcataaaatatacaag 6109213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 6447183 - 6447238
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||||||||| | ||||| || |||||||||||||||||| |||| ||||    
T  6447183 gtcctcgtgagtttaactcagttggtatggacaatgcataatatatgcaaggtccg 6447238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 13575281 - 13575340
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 311  Q
    |||||||||||||||||  | ||||| |||||||||||||||| |||| |||| ||||||    
T  13575281 ttgtcctcgtgagtttagctcagttggtagggacaatgcataacatatgcaagttccgag 13575340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 33482213 - 33482166
Alignment:
Q  257 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||  ||||||||||||||||||||||||| ||| ||||    
T  33482213 ctcgtgagtttagcttagttgatagggacaatgcataatttatgcaag 33482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 8687859 - 8687913
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 307  Q
    ||||||||||| ||||| | | ||| ||||||||||| |||||||||||||||||    
T  8687859 tgtcctcgtgaatttaactcaattggtagggacaatgtataatatatacaagatc 8687913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 8982561 - 8982610
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    |||||||||||||||||| ||||  || | ||||||||||||||||||||    
T  8982561 gtcctcgtgagtttaattcagttagtatgaacaatgcataatatatacaa 8982610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 10601762 - 10601819
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||| |||||| ||||| || |||||||||||||||||| |||||| || ||||||    
T  10601762 cgtgagcttaattcagttggtatggacaatgcataatatatgcaagattcgggattca 10601819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 14303156 - 14303209
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||||||||  | ||||| || |||||||| ||||||||||||||    
T  14303156 tttgtcctcgtgagtttagctcagttggtatggacaatgtataatatatacaag 14303209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 32223946 - 32223901
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||| ||| || ||||||||| |||||||||||||||||    
T  32223946 gtcctcgtgagcttagttcagttgatagagacaatgcataatatat 32223901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 33620889 - 33620942
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||| |||||||||||| | ||||  || |||||||||||||||||||||||    
T  33620889 tttgtcttcgtgagtttaactcagttagtatggacaatgcataatatatacaag 33620942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 1230731 - 1230683
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||||| |||||||| | ||||| |||| ||||||||||||||||    
T  1230731 tttgtcctcgcgagtttaactcagttggtaggaacaatgcataatatat 1230683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 1243811 - 1243763
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||||||||| ||||  |||  ||||||||||||||||    
T  1243811 tttgtcctcgtgagtttaattcagtttgtagaaacaatgcataatatat 1243763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 1254511 - 1254463
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||||||||| ||||  |||  ||||||||||||||||    
T  1254511 tttgtcctcgtgagtttaattcagtttgtagaaacaatgcataatatat 1254463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 7969000 - 7968952
Alignment:
Q  261 tgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||||||||| ||||| || |||||||||||||||||| |||| ||||    
T  7969000 tgagtttaattcagttggtaaggacaatgcataatatatgcaaggtccg 7968952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 11708980 - 11709036
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccga 310  Q
    ||||||||||| |||  | ||||| ||||||||||||||||||||| |||| |||||    
T  11708980 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccga 11709036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 12938972 - 12938944
Alignment:
Q  276 tgatagggacaatgcataatatatacaag 304  Q
    |||||||||||||||||||||||||||||    
T  12938972 tgatagggacaatgcataatatatacaag 12938944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 22948129 - 22948093
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  22948129 agttgatagggacaatgcataatatatgcaaggtccg 22948093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 32555246 - 32555298
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||||||||  ||||||| || ||||||||||||| |||| ||||    
T  32555246 ttgtcctcgtgagtttagcttagttggtatggacaatgcataaaatatgcaag 32555298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 33445562 - 33445614
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||| |||  | ||||| |||| |||||||||||||||||||||    
T  33445562 ttgtcctcgtgagcttagctcagttggtaggaacaatgcataatatatacaag 33445614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 964809 - 964746
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||||||| |||| | ||| |||||  ||||||||||||||||| |||||||||||||||    
T  964809 tgtcctcgtgagcttaactcagtcgatagaaacaatgcataatatatataagatccgagattca 964746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 1285132 - 1285081
Alignment:
Q  258 tcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||||| | |||||||||| |||||||||||||||| |||||||||    
T  1285132 tcgtgagtttaactcagttgataggaacaatgcataatatatgcaagatccg 1285081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 3584195 - 3584260
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||||| ||| |||| ||||||| || |||||||||||||||||| |||| | |||||||||    
T  3584195 tttgtcctcgcgagcttaacttagttggtaaggacaatgcataatatatgcaaggtacgagattca 3584260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 22267571 - 22267620
Alignment:
Q  250 ctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||||||||||||||| | ||||| ||| |||||||||||||||||    
T  22267571 ctttgtcctcgtgagtttaactcagttggtagagacaatgcataatatat 22267620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 24934749 - 24934794
Alignment:
Q  393 ttaaagtagcaactttatcttaaaaattatgcattcaacatattaa 438  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||||    
T  24934749 ttaaagtagcaactttatcttagaaattgtgcattcaacttattaa 24934794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 3948051 - 3948099
Alignment:
Q  257 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaaga 305  Q
    ||||||||||||| | ||||||||| ||||||||||||||||| |||||    
T  3948051 ctcgtgagtttaactcagttgatagagacaatgcataatatatgcaaga 3948099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 35222916 - 35222968
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||||||||  | |||||||||||||||||||| |||||| ||||    
T  35222916 ttgtcctcgtgagtttaggtcagttgatagggacaatgcatgatatatgcaag 35222968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 42829302 - 42829246
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||||| || | | ||||||||||||||||||||||||||| |||| ||||    
T  42829302 tgtcctcgtgagcttgactcagttgatagggacaatgcataatatatgcaagctccg 42829246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 20762831 - 20762874
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataa 294  Q
    |||||||||||||||||| || |||||||||| |||||||||||    
T  20762831 tttgtcctcgtgagtttagttcagttgataggaacaatgcataa 20762874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 30857241 - 30857292
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||||||  ||||||| || |||||||||||||||||| ||||    
T  30857241 tgtcctcgtgagtttagcttagttggtatggacaatgcataatatatgcaag 30857292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 1399155 - 1399217
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattc 315  Q
    ||||||||||||||||| | ||||| || ||||||||||| |||||| |||| || |||||||    
T  1399155 tgtcctcgtgagtttaactcagttggtatggacaatgcatgatatatgcaaggtctgagattc 1399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 28479904 - 28479870
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatc 307  Q
    |||||||| ||||||||||||||||||||||||||    
T  28479904 agttgataaggacaatgcataatatatacaagatc 28479870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 5352323 - 5352384
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattc 315  Q
    ||||||||||| |||  | ||||| || ||||||| ||||||||||||||| ||||||||||    
T  5352323 gtcctcgtgagcttagctcagttggtaaggacaatacataatatatacaaggtccgagattc 5352384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 37307922 - 37307885
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccga 310  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  37307922 agttgataggaacaatgcataatatatgcaagatccga 37307885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 8237701 - 8237637
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    ||||||||||||| ||| ||  |||| || ||||||||||||||||||||||  |||||| ||||    
T  8237701 ttgtcctcgtgagcttagttctgttggtaaggacaatgcataatatatacaaagtccgaggttca 8237637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 9819615 - 9819563
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 307  Q
    ||||||||||||||  | ||||| |||| |||||||||||||||| |||||||    
T  9819615 tcctcgtgagtttatctcagttggtaggaacaatgcataatatatgcaagatc 9819563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 10721540 - 10721488
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 307  Q
    ||||||||||||||  | ||||| |||| |||||||||||||||| |||||||    
T  10721540 tcctcgtgagtttatctcagttggtaggaacaatgcataatatatgcaagatc 10721488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 19599138 - 19599194
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||| |||||||||| | ||||| || |||||||||||||||||| |||| ||||    
T  19599138 tgtcctggtgagtttaactcagttggtatggacaatgcataatatatgcaaggtccg 19599194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 29461883 - 29461843
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  29461883 cgtgagtttaactcagttggtagggacaatgcataatatat 29461843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 41527555 - 41527611
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 311  Q
    |||||||||| |||  ||||||| || |||||||||||||||||| |||| ||||||    
T  41527555 tcctcgtgagcttagcttagttggtatggacaatgcataatatatgcaaggtccgag 41527611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 43681059 - 43681007
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||| |||||||||||| | ||||||| |||||||||||||| |||| ||||    
T  43681059 ttgtcatcgtgagtttaactcagttgattgggacaatgcataaaatatgcaag 43681007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 2692228 - 2692271
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||| |||||||||||||||||| ||||||||||||||||    
T  2692228 agttgatatggacaatgcataatatatgcaagatccgagattca 2692271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 7927694 - 7927738
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatata 298  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||    
T  7927694 gtcctcgtgagcttagttcagttgatagggacaatgcataatata 7927738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 12412270 - 12412321
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||| |||| ||||||| ||| ||||||||||||||||| ||||    
T  12412270 tgtcctcgtgagcttaacttagttggtagagacaatgcataatatatgcaag 12412321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 8809300 - 8809362
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    ||||||||||||||| || | ||||||   |||||||||||||||| ||||||||||| ||||    
T  8809300 gtcctcgtgagtttagttcaattgataaaaacaatgcataatatatgcaagatccgaggttca 8809362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 12336393 - 12336347
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatata 300  Q
    |||||||||||||||| | |||| ||| |||||||||||||||||||    
T  12336393 gtcctcgtgagtttaactcagttaatatggacaatgcataatatata 12336347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 21884981 - 21885023
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataata 296  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||    
T  21884981 gtcctcgtaagtttaacttaattgatagggacaatgcataata 21885023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 28478711 - 28478665
Alignment:
Q  392 cttaaagtagcaactttatcttaaaaattatgcattcaacatattaa 438  Q
    |||||||||| |||||||||||| ||||| || ||||||||||||||    
T  28478711 cttaaagtagaaactttatcttagaaattgtgtattcaacatattaa 28478665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 29791166 - 29791120
Alignment:
Q  392 cttaaagtagcaactttatcttaaaaattatgcattcaacatattaa 438  Q
    |||||||||| |||||||||||| ||||| || ||||||||||||||    
T  29791166 cttaaagtagaaactttatcttagaaattgtgtattcaacatattaa 29791120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 2445292 - 2445345
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagat 306  Q
    ||||||||| || |||| | |||||||| | |||||||||||||||||||||||    
T  2445292 tgtcctcgtaagcttaactcagttgatatgaacaatgcataatatatacaagat 2445345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 3373449 - 3373396
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagat 306  Q
    |||| |||||| ||||| | |||||||| |||||||||||||||||| ||||||    
T  3373449 tgtcttcgtgaatttaactcagttgatatggacaatgcataatatatgcaagat 3373396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 31971520 - 31971585
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    ||||||||||| || |||| | ||||| || |||||||||||||||||| |||| |||||| ||||    
T  31971520 tttgtcctcgtaagcttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttca 31971585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 11520583 - 11520627
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatat 297  Q
    |||||||||||||||| || ||||| ||| |||||||||||||||    
T  11520583 tgtcctcgtgagtttagttcagttggtagcgacaatgcataatat 11520627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 14552333 - 14552381
Alignment:
Q  256 cctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||| |||| | ||||||||| || |||||||||||||||||||    
T  14552333 cctcgtgagcttaactcagttgatagagataatgcataatatatacaag 14552381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 15291759 - 15291707
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||| |||| ||||||| || |||||||| ||||||||| ||||    
T  15291759 ttgtcctcgtgagcttaacttagttggtaaggacaatgaataatatatgcaag 15291707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 24373779 - 24373727
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||||||||| | | ||| ||| ||||||||||||||||| ||||    
T  24373779 ttgtcctcgtgagtttaactcaattggtagagacaatgcataatatatgcaag 24373727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 28231473 - 28231437
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  28231473 agttgatagggacaatgcataatatatgcaaggtccg 28231437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 40445976 - 40446027
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||||||| | |||||||| |||||||||||||||||| ||||    
T  40445976 tgtcctcgtgagtttaactcagttgataaggacaatgcataatatatgcaag 40446027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 1082289 - 1082224
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||| |||| |||| ||| || ||||| ||||||||||| |||||||||||||| |||||||||||    
T  1082289 tttgccctcatgagcttagttcagttggtagggacaatgtataatatatacaaggtccgagattca 1082224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 8545061 - 8545001
Alignment:
Q  249 tctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||||| |||||||| |||| | |||||||| |||||||||||||||||| |||| ||||    
T  8545061 tctttgttctcgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtccg 8545001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 10531531 - 10531579
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||||||||| ||| |||||||| || ||||||||||||||||||    
T  10531531 tttgtcctcgtgagcttagtttagttgctatggacaatgcataatatat 10531579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 17046331 - 17046385
Alignment:
Q  257 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 311  Q
    |||||||| |||| | ||||| || |||||||||||||||||| |||||||||||    
T  17046331 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaagatccgag 17046385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 28447486 - 28447532
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||||| | ||||  |||||||||||||||||||||    
T  28447486 tgtcctcgtgagtttaactcagttagtagggacaatgcataatatat 28447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 34436837 - 34436895
Alignment:
Q  246 atgtctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||| |||||||||||| |||  | ||||| ||||||||||||||||||||| ||||    
T  34436837 atgtctctgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaag 34436895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 4432110 - 4432155
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||| ||||||| | |||||||| ||||||||||||||||||    
T  4432110 gtcctcgtaagtttaactcagttgataaggacaatgcataatatat 4432155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 7861051 - 7861018
Alignment:
Q  271 ttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||||||||||||||||||| ||||    
T  7861051 ttagttgatagggacaatgcataatatatgcaag 7861018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 8885311 - 8885246
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    ||||||||||||||| ||| | | ||||| |||||||||||||| |||| |||| | |||||||||    
T  8885311 tttgtcctcgtgagtataactcatttgattgggacaatgcataaaatatgcaaggtacgagattca 8885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 42663271 - 42663222
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    |||||||||||||||| | ||||| |||| ||||| ||||||||||||||    
T  42663271 gtcctcgtgagtttaactcagttgttaggaacaatacataatatatacaa 42663222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 2523798 - 2523842
Alignment:
Q  392 cttaaagtagcaactttatcttaaaaattatgcattcaacatatt 436  Q
    ||||||| || |||||||||||| |||||||||||||||| ||||    
T  2523798 cttaaagcagtaactttatcttagaaattatgcattcaacttatt 2523842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 2642825 - 2642785
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||| ||||||| |||||| ||||||||||||||    
T  2642825 cgtgagtttaacttagttggtagggataatgcataatatat 2642785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 6237782 - 6237734
Alignment:
Q  258 tcgtgagtttaatttagttgatagggacaatgcataatatatacaagat 306  Q
    |||||||||||| | |||||  |||||||||||||||||||| ||||||    
T  6237782 tcgtgagtttaactaagttggcagggacaatgcataatatatgcaagat 6237734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 10515545 - 10515597
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||||| ||||    
T  10515545 ttgtcctcgtgagtttaacttagttggaatggacaatgaataatatatgcaag 10515597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 13484574 - 13484542
Alignment:
Q  283 gacaatgcataatatatacaagatccgagattc 315  Q
    ||||||||||||||||||||||||| |||||||    
T  13484574 gacaatgcataatatatacaagatctgagattc 13484542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 14124307 - 14124347
Alignment:
Q  266 ttaatttagttgatagggacaatgcataatatatacaagat 306  Q
    |||| ||||||| || |||||||||||||||||||||||||    
T  14124307 ttaacttagttggtaaggacaatgcataatatatacaagat 14124347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 14869991 - 14870035
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    |||||| |||| | ||||| |||||||||||||||||||||||||    
T  14869991 cgtgagcttaactcagttgctagggacaatgcataatatatacaa 14870035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 17861974 - 17862018
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||  | ||||| |||||||||||||||||||||    
T  17861974 tcctcgtgagtttagctcagttggtagggacaatgcataatatat 17862018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 34903444 - 34903400
Alignment:
Q  392 cttaaagtagcaactttatcttaaaaattatgcattcaacatatt 436  Q
    |||||||||| ||||||||||| |||||| |||||||||| ||||    
T  34903444 cttaaagtagtaactttatcttgaaaattgtgcattcaacttatt 34903400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 7827500 - 7827547
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||    
T  7827500 ttgtcctcgtgagtttaactcagttgatatggacaatgcataatatat 7827547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 7829888 - 7829935
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||    
T  7829888 ttgtcctcgtgagtttaactcagttgatatggacaatgcataatatat 7829935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 32753821 - 32753872
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||| || | | ||||||||||||||||||||||||||||||||    
T  32753821 tgtcctcgtgagcttgactcagttgatagggacaatgcataatatatacaag 32753872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 48924392 - 48924337
Alignment:
Q  248 gtctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    |||| ||||||||||||||||  ||||||| ||||||||||| |||||||||||||    
T  48924392 gtctctgtcctcgtgagtttagcttagttggtagggacaatgtataatatatacaa 48924337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 48517669 - 48517715
Alignment:
Q  258 tcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||| | |||||||||| |||||||||||||||||||||    
T  48517669 tcgtgagtttaactcagttgataggaacaatgcataatatatacaag 48517715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 12976664 - 12976619
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||    
T  12976664 cgtgagtttaactcagttgatagggacaatgcataatatatgcaag 12976619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 28093346 - 28093398
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||| ||||||||||||| ||||| || |||||||||||||||||| ||||    
T  28093346 ttgtccccgtgagtttaattcagttggtatggacaatgcataatatatgcaag 28093398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 7738660 - 7738718
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||||||||||| |||| | ||||| |||||||||||||||| |||| |||| ||||    
T  7738660 tttgtcctcgtgagcttaactcagttggtagggacaatgcataaaatatgcaaggtccg 7738718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 10922370 - 10922320
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    |||||| |||| | ||||| ||||||||||||||||||||| |||||||||    
T  10922370 cgtgagcttaactcagttggtagggacaatgcataatatatgcaagatccg 10922320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 39869867 - 39869817
Alignment:
Q  261 tgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 311  Q
    ||||||||| | ||||| || ||||||||||||||||||||||| ||||||    
T  39869867 tgagtttaactcagttggtaaggacaatgcataatatatacaaggtccgag 39869817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 46226143 - 46226089
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||||||||||||| | | ||| ||||||||||||||||||||| |||| ||||    
T  46226143 tcctcgtgagtttaactcaattggtagggacaatgcataatatatgcaaggtccg 46226089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 7464558 - 7464513
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||| |||| | ||||| |||||||||||||||||||||    
T  7464558 gtcctcgtgagcttaactcagttggtagggacaatgcataatatat 7464513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 8139710 - 8139759
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||| ||| |||||||| || |||||||||||||||||| ||||    
T  8139710 tcctcgtgagcttagtttagttggtatggacaatgcataatatatgcaag 8139759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 9598430 - 9598495
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||||||||| ||| || ||||| | ||||||||| |||| |||| |||| |||||||||||    
T  9598430 tttgtcctcgtgagcttagttcagttggttgggacaatgtataaaatatgcaaggtccgagattca 9598495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 22462302 - 22462351
Alignment:
Q  250 ctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    |||||||| |||||| |||| | |||||||| ||||||||||||||||||    
T  22462302 ctttgtccccgtgagcttaactcagttgataaggacaatgcataatatat 22462351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 23332640 - 23332689
Alignment:
Q  250 ctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||  |||| |||||||||| | ||||||||||||||||    
T  23332640 ctttgtcctcgtgaacttaacttagttgatatgaacaatgcataatatat 23332689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 28052452 - 28052399
Alignment:
Q  251 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||| ||||||||| || ||||||||||||||| ||||||| ||| ||||    
T  28052452 tttgtccttgtgagtttagttcagttgatagggacaacgcataatttatccaag 28052399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 38387966 - 38388019
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 307  Q
    ||||||||||| |||  | ||||||||| ||||||||||||||||| |||||||    
T  38387966 gtcctcgtgagcttagctcagttgatagtgacaatgcataatatatgcaagatc 38388019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 7824799 - 7824851
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||||||||||| | ||||||||  |||||| |||||||||| ||||    
T  7824799 ttgtcctcgtgagtttaactcagttgatatagacaatacataatatatgcaag 7824851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 24145411 - 24145447
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  24145411 agttggtagggacaatgcataatatatacaaggtccg 24145447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 35126331 - 35126283
Alignment:
Q  259 cgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 307  Q
    ||||||||||| | ||||| |||||| |||||||||||||| |||||||    
T  35126331 cgtgagtttaactcagttggtagggataatgcataatatatgcaagatc 35126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 37921064 - 37921020
Alignment:
Q  255 tcctcgtgagtttaatttagttgatagggacaatgcataatatat 299  Q
    ||||||||||||||  | |||||||||||| ||||||||||||||    
T  37921064 tcctcgtgagtttagctcagttgatagggataatgcataatatat 37921020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 41168207 - 41168155
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    |||||||||| || |||| |  ||||||||| |||||||||||||||||||||    
T  41168207 ttgtcctcgtaagcttaactcggttgataggaacaatgcataatatatacaag 41168155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 22904 - 22967
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 316  Q
    |||||||||||| ||| ||||||||||| | ||||||||||| |||| |||| |||||| ||||    
T  22904 tgtcctcgtgagcttagtttagttgatatgaacaatgcataaaatatgcaaggtccgaggttca 22967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 4463 - 4510
Alignment:
Q  257 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||||  ||||||||||||||||||||||||| ||| ||||    
T  4463 ctcgtgagtttagcttagttgatagggacaatgcataatttatgcaag 4510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 99031 - 99081
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||||||| || | | ||||||||||||||||||||||||||| ||||    
T  99031 gtcctcgtgagcttgactcagttgatagggacaatgcataatatatgcaag 99081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 63856 - 63905
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    |||||||||||||||  | ||||| ||||||||||| |||||||||||||    
T  63856 gtcctcgtgagtttagctcagttggtagggacaatgtataatatatacaa 63905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 71188 - 71237
Alignment:
Q  254 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 303  Q
    |||||||||||||||  | ||||| ||||||||||| |||||||||||||    
T  71188 gtcctcgtgagtttagctcagttggtagggacaatgtataatatatacaa 71237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 1599 - 1651
Alignment:
Q  252 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 304  Q
    ||||||| ||||| |||  |||||||||||||||||| |||||||||| ||||    
T  1599 ttgtccttgtgagcttaggttagttgatagggacaatacataatatatccaag 1651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 31970 - 31934
Alignment:
Q  273 agttgatagggacaatgcataatatatacaagatccg 309  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  31970 agttgatagggacaatgcataatatatgcaaggtccg 31934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 119562 - 119606
Alignment:
Q  253 tgtcctcgtgagtttaatttagttgatagggacaatgcataatat 297  Q
    |||||||||||| |||| | ||||||||||||||||| |||||||    
T  119562 tgtcctcgtgagcttaactcagttgatagggacaatgtataatat 119606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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