View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_low_12 (Length: 432)
Name: NF0370_low_12
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 33 - 311
Target Start/End: Original strand, 39292503 - 39292782
Alignment:
| Q |
33 |
tctacggtcttacttagggtgtgttagtgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcaca |
132 |
Q |
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| T |
39292503 |
tctacggtcttacttagggtgtgttagtgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcaca |
39292602 |
T |
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| Q |
133 |
atacaagg-nnnnnnnnnnatattacaaagcagaacacaagtgttaattaaattaccgaatataagacttagtaattgacaaaaatatcttgcaactata |
231 |
Q |
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| T |
39292603 |
atacaaggtttttttttttatattacaaagcagaacacaagtgttaattaaattaccgaatataagacttagtagttgagaaaaatatcttgcaactata |
39292702 |
T |
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| Q |
232 |
tttcnnnnnnnnnntattgcaactagttatatagatctcgaacaagatttacggtagaagaagatggaaaagaatagtag |
311 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39292703 |
tttccaaaaaaatatattgcaactagttataaagatctcgaacaagatttacggtagaagaagaaggaaaagaatagtag |
39292782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 39235494 - 39235421
Alignment:
| Q |
60 |
tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaa |
133 |
Q |
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| T |
39235494 |
tgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatatactgcacaa |
39235421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 39047822 - 39047759
Alignment:
| Q |
72 |
aagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaata |
135 |
Q |
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| T |
39047822 |
aagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatatactgcacaata |
39047759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 39053836 - 39053763
Alignment:
| Q |
60 |
tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaa |
133 |
Q |
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||||||||| | ||||||||||||||| |||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
39053836 |
tgtcatctcacgaagctccttcaagcaagggtgttcatttggaaacacacttgtgtcaagtatatactgcacaa |
39053763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 7562837 - 7562764
Alignment:
| Q |
60 |
tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaa |
133 |
Q |
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||||||||| | |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
7562837 |
tgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatatactgcacaa |
7562764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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