View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0370_low_19 (Length: 347)
Name: NF0370_low_19
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 11540595 - 11540906
Alignment:
| Q |
12 |
atgaagcgccacgtccctgaggattacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatatcctc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11540595 |
atgaagcgccacgtccctgaggattacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatataatc |
11540694 |
T |
|
| Q |
112 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatattgagtaacatgatacaaagttaacctgttta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11540695 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatattgagtaacatgatacaaagttaacctgttta |
11540794 |
T |
|
| Q |
212 |
ggttcaaaaccttgcggcatctgaagaagccgaattgaaagggactatgagatccatggttttgattgctcaaaagcaaggatggaagaccctgttttca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11540795 |
ggttcaaaaccttgcggcatctgaagaagccgaattgaaagggactatgagatccatggttttgattgctcaaaagcaaggatggaagaccctgttttca |
11540894 |
T |
|
| Q |
312 |
gggctgagtatc |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11540895 |
gggctgagtatc |
11540906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 34599688 - 34599999
Alignment:
| Q |
12 |
atgaagcgccacgtccctgaggattacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatatcctc |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34599688 |
atgaagcgccgcgtccctgaggattacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatatcctc |
34599787 |
T |
|
| Q |
112 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatattgagtaacatgatacaaagttaacctgttta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34599788 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatattgagtaacatgatacaaagttaacctgtcta |
34599887 |
T |
|
| Q |
212 |
ggttcaaaaccttgcggcatctgaagaagccgaattgaaagggactatgagatccatggttttgattgctcaaaagcaaggatggaagaccctgttttca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34599888 |
ggttcaaaaccttgcggcatctgaagaagccgaattgaaaggcactatgagatccatggttttgattgctcaaaagcaaggctggaagaccctgttttca |
34599987 |
T |
|
| Q |
312 |
gggctgagtatc |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34599988 |
gggctgagtatc |
34599999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 34739791 - 34740102
Alignment:
| Q |
12 |
atgaagcgccacgtccctgaggattacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatatcctc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34739791 |
atgaagcgccacgtccctgaggattacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatatcctc |
34739890 |
T |
|
| Q |
112 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatattgagtaacatgatacaaagttaacctgttta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
34739891 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatatttagtaacatgatacaaagttaacctgacta |
34739990 |
T |
|
| Q |
212 |
ggttcaaaaccttgcggcatctgaagaagccgaattgaaagggactatgagatccatggttttgattgctcaaaagcaaggatggaagaccctgttttca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34739991 |
ggttcaaaaccttgcggcatctgaagaagccgaattgaaagggactatgagatccatggttttgattgctcaaaagcaaggctggaagaccctgttttca |
34740090 |
T |
|
| Q |
312 |
gggctgagtatc |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34740091 |
gggctgagtatc |
34740102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 34756325 - 34756636
Alignment:
| Q |
12 |
atgaagcgccacgtccctgaggattacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatatcctc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34756325 |
atgaagcgccacgtccctgaggattacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatattttc |
34756424 |
T |
|
| Q |
112 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatattgagtaacatgatacaaagttaacctgttta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34756425 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatattgagtaacatgatacaaagttaacctgtcta |
34756524 |
T |
|
| Q |
212 |
ggttcaaaaccttgcggcatctgaagaagccgaattgaaagggactatgagatccatggttttgattgctcaaaagcaaggatggaagaccctgttttca |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34756525 |
ggttcaaaaccttacggcatctgaagaagccgagttgaaagggactatgagatccatggttttgattgctcaaaagcaaggctggaagaccctgttttca |
34756624 |
T |
|
| Q |
312 |
gggctgagtatc |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34756625 |
gggctgagtatc |
34756636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 34626222 - 34626533
Alignment:
| Q |
12 |
atgaagcgccacgtccctgaggattacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatatcctc |
111 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34626222 |
atgaagcgccacgtccctgaggactacaagaaaagcatcatggcgaaactgacatgtggatccgtggccggtttattgggtcagacattcacatattttc |
34626321 |
T |
|
| Q |
112 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatattgagtaacatgatacaaagttaacctgttta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34626322 |
ttgaagttgtcaggaggcaaatgcaggtaacgtgctttatttggtcggctggaaattatagatggatattgagtaacatgatacaaagttaacctgtcta |
34626421 |
T |
|
| Q |
212 |
ggttcaaaaccttgcggcatctgaagaagccgaattgaaagggactatgagatccatggttttgattgctcaaaagcaaggatggaagaccctgttttca |
311 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34626422 |
ggttcaaaaccttccagcatctgaagaagccgagttgaaagggactatgagatccatggttttgattgctcaaaagcaaggctggaagaccctgttttca |
34626521 |
T |
|
| Q |
312 |
gggctgagtatc |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34626522 |
gggctgagtatc |
34626533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1486 times since January 2019
Visitors: 3088