View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_low_24 (Length: 303)
Name: NF0370_low_24
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 294
Target Start/End: Original strand, 39758572 - 39758836
Alignment:
| Q |
30 |
taaagcggaggagttgtatctttgcacggcttttccagcattggttcatgacaactctatagttctttccgcggcctcgagttgtcgcaaagtctcattc |
129 |
Q |
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| T |
39758572 |
taaagcggaggagttgtatctttgcacggattttccagcattggttcatgacaactctatagttctttccgcggcctcgagttgtcgcaaagtctcattc |
39758671 |
T |
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| Q |
130 |
accaaaggtcgagcctgaactgactctttgtgtccattgattctgctattcgggtatatgccttctcacagttagctatcaattcaagagtaaccttggc |
229 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39758672 |
accaaaggtcgagcctgaactgactctttgcgtccgttgattctgctattcgggtatatgccttctcacagttagctatcaattcaagagtaaccttggc |
39758771 |
T |
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| Q |
230 |
ttcttgctgaggttgcttcttctcgcacaattcggatagatttagctggtccttcaccttcttca |
294 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
39758772 |
ttcttgctgaggttgcttcttctcgcacaattcagatggatttagctggtccttcaccttcttca |
39758836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 39764332 - 39764401
Alignment:
| Q |
90 |
agttctttccgcggcctcgagttgtcgcaaagtctcattcaccaaaggtcgagcctgaactgactctttg |
159 |
Q |
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|||||||| ||| ||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||| |
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| T |
39764332 |
agttcttttcgctgcctcaagttgtcgcaaagtctcgttcaccaaaggttgagcctgatttgactctttg |
39764401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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