View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0370_low_29 (Length: 280)

Name: NF0370_low_29
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0370_low_29
NF0370_low_29
[»] chr1 (12 HSPs)
chr1 (29-273)||(14467641-14467885)
chr1 (26-268)||(14481820-14482062)
chr1 (29-262)||(14522665-14522898)
chr1 (43-262)||(15010852-15011071)
chr1 (72-262)||(15001988-15002178)
chr1 (72-262)||(15016996-15017186)
chr1 (54-262)||(14532786-14532994)
chr1 (72-262)||(15024998-15025188)
chr1 (72-262)||(15032339-15032529)
chr1 (72-262)||(15036901-15037091)
chr1 (54-257)||(14503845-14504048)
chr1 (44-233)||(15040612-15040801)
[»] scaffold0400 (2 HSPs)
scaffold0400 (43-262)||(6343-6562)
scaffold0400 (54-262)||(12642-12850)
[»] scaffold0365 (2 HSPs)
scaffold0365 (43-262)||(6987-7206)
scaffold0365 (54-262)||(13285-13493)
[»] chr7 (5 HSPs)
chr7 (205-255)||(14605912-14605962)
chr7 (205-255)||(16025089-16025139)
chr7 (205-254)||(16102894-16102943)
chr7 (205-254)||(16172571-16172620)
chr7 (107-254)||(17848447-17848594)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 273
Target Start/End: Original strand, 14467641 - 14467885
Alignment:
Q  29 atttaagtggttcaatcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtt 128  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14467641 atttaagtggttcaatcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtt 14467740  T
Q  129 tggccaattaaatgttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattg 228  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||  |||| |||||||||    
T  14467741 tggccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaacattg 14467840  T
Q  229 aatctctcacataataatctttctggtaccattctcttcatctca 273  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  14467841 aatctctcacataataatctttctggtaccattctcttcagctca 14467885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 14481820 - 14482062
Alignment:
Q  26 atcatttaagtggttcaatcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttga 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  14481820 atcatttaagtggttcaatcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcga 14481919  T
Q  126 gtttggccaattaaatgttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaaca 225  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||  |||| ||||||    
T  14481920 gtttggccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaaca 14482019  T
Q  226 ttgaatctctcacataataatctttctggtaccattctcttca 268  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  14482020 ttgaatctctcacataataatctttctggtaccattcccttca 14482062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 14522898 - 14522665
Alignment:
Q  29 atttaagtggttcaatcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtt 128  Q
    ||||||||||||  |||||  || |||||||||| ||||| | ||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||  |    
T  14522898 atttaagtggttttatccctgaaaaacttggaaggttgtctaggttattgcagttgaatttgagccaaaataagtttgaaggaaacattcctgttgaact 14522799  T
Q  129 tggccaattaaatgttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattg 228  Q
    ||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||  ||||| | || ||||||||   ||| |||||||||    
T  14522798 tggtcaattgaatgttattgaagatcttgatcttagcgggaattttttgaatggaaccataccaacaatgcttggacagttaaatcgcttagaaacattg 14522699  T
Q  229 aatctctcacataataatctttctggtaccattc 262  Q
    |||||||||||||||||||| | ||||| |||||    
T  14522698 aatctctcacataataatctctatggtaacattc 14522665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 43 - 262
Target Start/End: Original strand, 15010852 - 15011071
Alignment:
Q  43 atcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatg 142  Q
    ||||| ||| ||||||| |  ||||| | ||||||||| || ||||| ||| |||||| |||||| || |||||||||||||||||||||||||| ||||    
T  15010852 atccctaaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgttgagtttggccaattgaatg 15010951  T
Q  143 ttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataa 242  Q
    |||||||| ||||||||||||| | ||||| | |||| |||||||| || |||||| | || ||||||||  |||| |||||||||||||||||||||||    
T  15010952 ttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataa 15011051  T
Q  243 taatctttctggtaccattc 262  Q
     ||||| |||||||||||||    
T  15011052 caatctctctggtaccattc 15011071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 15001988 - 15002178
Alignment:
Q  72 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 171  Q
    ||||||||| || ||||| ||| |||||| |||||| || |||||||||||||||||||||||||| |||||||||||| | ||||||||||| | ||||    
T  15001988 gttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaat 15002087  T
Q  172 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 262  Q
    | | |||| |||||||| || |||||| | || ||||||||  |||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15002088 tctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattc 15002178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 15016996 - 15017186
Alignment:
Q  72 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 171  Q
    ||||||| | || ||||| ||| |||||| |||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||    
T  15016996 gttattgaagttaaatttgagccaaaataagtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaat 15017095  T
Q  172 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 262  Q
    | | |||| |||||||| || |||||| | || ||||||||  |||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15017096 tctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattc 15017186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 54 - 262
Target Start/End: Complemental strand, 14532994 - 14532786
Alignment:
Q  54 acttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagat 153  Q
    ||||||||| |||||  ||||| | || |||||||| ||| |||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  14532994 acttggaaggttgtctgagttaatacatttgaatttgagccaaaataagttcgaaggaaacattcctgttgagtttgaccaattaaaggttattgaagat 14532895  T
Q  154 cttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctg 253  Q
    ||||||||||| || ||| || |||  |||||||| ||  ||||| | || ||||||||  ||||  ||||||||||||| |||||||||||||||||||    
T  14532894 cttgatcttagtgaaaatgttatgagtggaaccataccatcaatgcttggacagttaaatcacttacaaacattgaatctttcacataataatctttctg 14532795  T
Q  254 gtaccattc 262  Q
    | |||||||    
T  14532794 gaaccattc 14532786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 15024998 - 15025188
Alignment:
Q  72 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 171  Q
    ||||||||| || ||||| ||| |||||| |||||| || |||||||||| |||||||| |||||| |||||||||||| ||||||||||||| | ||||    
T  15024998 gttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaat 15025097  T
Q  172 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 262  Q
    ||| |||| |||||||| ||  ||||| | |||||||||||   ||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15025098 tttatgaatggaaccataccatcaatgcttgggcagttaaatcgcttagaaacattgaatctctcacataacaatctctctggtaccattc 15025188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 15032339 - 15032529
Alignment:
Q  72 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 171  Q
    ||||||||| || ||||| ||| |||||| |||||| || |||||||||| |||||||| |||||| |||||||||||| ||||||||||||| | ||||    
T  15032339 gttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaat 15032438  T
Q  172 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 262  Q
    ||| |||| |||||||| ||  ||||| | |||||||||||   ||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15032439 tttatgaatggaaccataccatcaatgcttgggcagttaaatcgcttagaaacattgaatctctcacataacaatctctctggtaccattc 15032529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 15036901 - 15037091
Alignment:
Q  72 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 171  Q
    ||||||||| |||||||| ||| | |||| | |||| || |||||||||||||||||||||||||| |||||||||||| | ||||||||||| | ||||    
T  15036901 gttattgcagttgaatttgagccataataagcttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaat 15037000  T
Q  172 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 262  Q
    | | |||| |||||||| || |||||| | || ||||||||  |||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15037001 tctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattc 15037091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 54 - 257
Target Start/End: Original strand, 14503845 - 14504048
Alignment:
Q  54 acttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagat 153  Q
    ||||||||| |||||  ||||| | || |||||||| ||| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  14503845 acttggaaggttgtctgagttaatacatttgaatttgagccaaaataagtttgaaggaaacattcccgttgagtttggccgattaaatgttattgaagat 14503944  T
Q  154 cttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctg 253  Q
    |||||||| || |  |||||| |||| ||||| || ||  ||||||| ||   ||||||  | || ||||||||||||||||||||||||||||| ||||    
T  14503945 cttgatctcagtggaaattttatgaatggaacgataccttcaatgtttggagtgttaaatcatttagaaacattgaatctctcacataataatctgtctg 14504044  T
Q  254 gtac 257  Q
    ||||    
T  14504045 gtac 14504048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 233
Target Start/End: Original strand, 15040612 - 15040801
Alignment:
Q  44 tcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgt 143  Q
    ||||||||||||||||||| || || | |||||| ||||| ||| | ||| |||||| |||||||||||||||||||| |||| |||| || ||||| ||    
T  15040612 tcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaaggaaacattcctgatgagattggacagttaaaagt 15040711  T
Q  144 tattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatct 233  Q
    ||||||| ||||||||||||| | ||||| |||||| |||||||| ||  ||||| | || ||||||||   ||| ||||||||||||||    
T  15040712 tattgaaaatcttgatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagttaaatcgcttagaaacattgaatct 15040801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 43 - 262
Target Start/End: Original strand, 6343 - 6562
Alignment:
Q  43 atcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatg 142  Q
    |||||| ||||||||||||| ||  | || |||||| |||||||||| ||| |||||| |||||||||| ||||||||| ||||||||| ||||| ||      
T  6343 atcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaaggagacattcctgctgagtttggacaattgaaaa 6442  T
Q  143 ttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataa 242  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||| ||  ||||| | ||  |||||||   ||| |||||||||||||||||||||||    
T  6443 ttattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagttaaatcgcttagaaacattgaatctctcacataa 6542  T
Q  243 taatctttctggtaccattc 262  Q
    |||| |||||||||||||||    
T  6543 taatttttctggtaccattc 6562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 54 - 262
Target Start/End: Original strand, 12642 - 12850
Alignment:
Q  54 acttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagat 153  Q
    ||||||||| |||||  ||||| | || |||||||| ||| |||||| ||||||||||||||||||  ||||||||||||||||| | ||||||||||||    
T  12642 acttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaaggaaacattcccattgagtttggccaattagaagttattgaagat 12741  T
Q  154 cttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctg 253  Q
    ||||| ||||| |  |||||||||||||||||||| ||  ||||| | || ||||||||  || |  ||||||||||||| |||||||||||||||||||    
T  12742 cttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaacattgaatctttcacataataatctttctg 12841  T
Q  254 gtaccattc 262  Q
    | |||||||    
T  12842 gaaccattc 12850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 43 - 262
Target Start/End: Original strand, 6987 - 7206
Alignment:
Q  43 atcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatg 142  Q
    |||||| ||||||||||||| ||  | || |||||| |||||||||| ||| |||||| |||||||||| ||||||||| ||||||||| ||||| ||      
T  6987 atcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaaggagacattcctgctgagtttggacaattgaaaa 7086  T
Q  143 ttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataa 242  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||| ||  ||||| | ||  |||||||   ||| |||||||||||||||||||||||    
T  7087 ttattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagttaaatcgcttagaaacattgaatctctcacataa 7186  T
Q  243 taatctttctggtaccattc 262  Q
    |||| |||||||||||||||    
T  7187 taatttttctggtaccattc 7206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 54 - 262
Target Start/End: Original strand, 13285 - 13493
Alignment:
Q  54 acttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagat 153  Q
    ||||||||| |||||  ||||| | || |||||||| ||| |||||| ||||||||||||||||||  ||||||||||||||||| | ||||||||||||    
T  13285 acttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaaggaaacattcccattgagtttggccaattagaagttattgaagat 13384  T
Q  154 cttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctg 253  Q
    ||||| ||||| |  |||||||||||||||||||| ||  ||||| | || ||||||||  || |  ||||||||||||| |||||||||||||||||||    
T  13385 cttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaacattgaatctttcacataataatctttctg 13484  T
Q  254 gtaccattc 262  Q
    | |||||||    
T  13485 gaaccattc 13493  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 14605912 - 14605962
Alignment:
Q  205 cagttaaaatacttggaaacattgaatctctcacataataatctttctggt 255  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  14605912 cagttgaaatacttggaaacattgaatatctcacataataatctttctggt 14605962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 16025089 - 16025139
Alignment:
Q  205 cagttaaaatacttggaaacattgaatctctcacataataatctttctggt 255  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  16025089 cagttgaaatacttggaaacattgaatatctcacataataatctttctggt 16025139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 16102894 - 16102943
Alignment:
Q  205 cagttaaaatacttggaaacattgaatctctcacataataatctttctgg 254  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  16102894 cagttgaaatacttggaaacattgaatatctcacataataatctttctgg 16102943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 16172571 - 16172620
Alignment:
Q  205 cagttaaaatacttggaaacattgaatctctcacataataatctttctgg 254  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  16172571 cagttgaaatacttggaaacattgaatatctcacataataatctttctgg 16172620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 17848447 - 17848594
Alignment:
Q  107 aaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggca 206  Q
    ||||||| ||||||||||||||||||||||| || ||  || ||  |||||||||||| | ||||||| | |||||||| || ||| ||| | | |  ||    
T  17848447 aaggaaatattcctgttgagtttggccaatttaaagtccttcaaagtcttgatcttagtgggaattttctcaacggaacaataccgtcaacgcttgctca 17848546  T
Q  207 gttaaaatacttggaaacattgaatctctcacataataatctttctgg 254  Q
      | | |||||| ||| |||||||| | ||||||||||| ||||||||    
T  17848547 actgatatacttagaatcattgaatatatcacataataacctttctgg 17848594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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