View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0370_low_3 (Length: 652)
Name: NF0370_low_3
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 68 - 641
Target Start/End: Complemental strand, 4556102 - 4555526
Alignment:
| Q |
68 |
gaaattttaaggaagagttacgacaatttccaacttacaatccatggaagaagaggccagcaccaccatatcagaagctaccgtttatgtatggtatgac |
167 |
Q |
| |
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|||||||| ||||| ||||||||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4556102 |
gaaattttgaggaacagttacgacgatctccaatttacaatccatgggagaagaggccagcaccaccatatcagaagctactgtttatgtatggtatgac |
4556003 |
T |
|
| Q |
168 |
atttttagagtcttgaaagatttgttctcaaaagtttatttcataataaaatttacaaatagaa-tatgnnnnnnnnnnntagaccacnnnnnnnnnn-- |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
4556002 |
atttttagagtcttgaaagatttgttctcaaaagtttatttcataataaaatttacaaatagaaatatgataaaaaaaaatagaccacttttttttttta |
4555903 |
T |
|
| Q |
265 |
aaatcaaaatgaaatatattaaatccccagcacaaggtgtgccaaaggagatagctattaattacttcaatgtttcaacggtaataacaacagttaaccg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
4555902 |
aaatcaaaatgaaatatattaaatccccagcacaaggtgtgccaaaggagatagctattaattacttcaatgtttcaacggtaataacaacagatagccg |
4555803 |
T |
|
| Q |
365 |
accccaacataagaaaggggtatggcaccaatcatgaaacatataatgataaacaacaaattatgtaggtgatgattgtcacgattcaagagaacaatca |
464 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4555802 |
accccagcataagaaagggttatggcaccaatcatgaaacatataatgataaacaacaaattatgtaggtgatgattgtcacgattcaagagaacaatca |
4555703 |
T |
|
| Q |
465 |
cttacaactacatacaaatccaaccttaatatagtcctttcatcgctcacctctgatgctattgtaagtaaaggatataatcacacaagcataggagaca |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4555702 |
cttacaactacatacaaatccaaccttaataaattcctttcatcgctcacctttgatggtattgtaagtaaaggatataatcacacaagcataggagaca |
4555603 |
T |
|
| Q |
565 |
acacagttgatgctgtctatggattctatgactgtagaggtgatgtcacaggatcattttgtcaattttgtgtctct |
641 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4555602 |
acacagttgatgctgtctatggactctatgactgtagaggtgatgtcacaggatcattttgtcaattttgtgtctct |
4555526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 421 - 640
Target Start/End: Original strand, 3075425 - 3075644
Alignment:
| Q |
421 |
caaattatgtaggtgatgattgtcacgattcaagagaacaatcacttacaactacatacaaatccaaccttaatatagtcctttcatcgctcacctctga |
520 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||||| |
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|
| T |
3075425 |
caaattatgtaggtgatgattgtcacaattcaactgaaaaatcacttacaactacatacaaatccaaccttaataaagtcctttcattgctctcatctga |
3075524 |
T |
|
| Q |
521 |
tgctattgtaagtaaaggatataatcacacaagcataggagacaacacagttgatgctgtctatggattctatgactgtagaggtgatgtcacaggatca |
620 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| | ||||| |||||||||||||| ||||||||| |
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|
| T |
3075525 |
tgctattgtaagtaaaggatataatcatacaagtataggtgacaatacagttgatgctgtctatggtctgtatgattgtagaggtgatgtaacaggatca |
3075624 |
T |
|
| Q |
621 |
ttttgtcaattttgtgtctc |
640 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
3075625 |
ttttgtcaattttgtgtctc |
3075644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 421 - 641
Target Start/End: Original strand, 3085966 - 3086186
Alignment:
| Q |
421 |
caaattatgtaggtgatgattgtcacgattcaagagaacaatcacttacaactacatacaaatccaaccttaatatagtcctttcatcgctcacctctga |
520 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||||||| |||||| ||||||||||||| |||||||||| |||||| ||| || ||||||| |
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| T |
3085966 |
caaattatgtaggtgatgattgtcacaactcaaccgaacaatctcttacagctacatacaaatctaaccttaataaagtcctctcacttctttcctctga |
3086065 |
T |
|
| Q |
521 |
tgctattgtaagtaaaggatataatcacacaagcataggagacaacacagttgatgctgtctatggattctatgactgtagaggtgatgtcacaggatca |
620 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||||||| |||||| |
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|
| T |
3086066 |
tgctattgtaagtaaaggatataatcatacaagcataggagagaacacaattgatgctgtctatggtctctatgattgtagaggtgatgtcactggatca |
3086165 |
T |
|
| Q |
621 |
ttttgtcaattttgtgtctct |
641 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
3086166 |
ttttgtcaattttgtgtctct |
3086186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 4539467 - 4539332
Alignment:
| Q |
96 |
tccaacttacaatccatggaagaagaggccagcaccaccatatcagaagctaccgtttatgtatggtatgacatttttagagtc-ttgaaagatttgttc |
194 |
Q |
| |
|
|||||||||||| || | |||||||||| | |||||||| |||||||||||| | |||| ||||||||| |||||||||| || |||||||| | | |
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|
| T |
4539467 |
tccaacttacaagccttcaaagaagaggctacaaccaccatttcagaagctaccacgtgtgtaaggtatgacacttttagagtctttaaaagatttatac |
4539368 |
T |
|
| Q |
195 |
tcaaaagtttatttcataataaaatttacaaataga |
230 |
Q |
| |
|
| ||||||||||||||||||||| ||| |||||||| |
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|
| T |
4539367 |
taaaaagtttatttcataataaagttttcaaataga |
4539332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 30406147 - 30406195
Alignment:
| Q |
378 |
aaaggggtatggcaccaatcatgaaacatataatgataaacaacaaatt |
426 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
30406147 |
aaagggttctggcaccaatcatgaaacttataatgaaaaacaacaaatt |
30406195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 44554112 - 44554054
Alignment:
| Q |
13 |
aaggcagcagcggcgacctgttgttgaagaagaaacaagcacgacggtttgttgagaaa |
71 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
44554112 |
aaggcagcggcggcgacctgttgttgaagaagaaacaagcacggcggtttgttgagaaa |
44554054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 31966601 - 31966666
Alignment:
| Q |
289 |
ccccagcacaaggtgtgccaaaggagatagctattaattacttcaatgtttcaacggtaataacaa |
354 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| ||||||| |||||||||||| | |||||||| |
|
|
| T |
31966601 |
ccccagcacaaggtgtgtcaaatgagatagctaataattacaacaatgtttcaacagcaataacaa |
31966666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 413
Target Start/End: Original strand, 25095932 - 25096060
Alignment:
| Q |
287 |
atccccagcacaaggtgtgccaaaggagatagctattaattacttcaatgtttcaacggtaataacaacagttaaccga--ccccaacataagaaagggg |
384 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||| |||| |||| ||| | |||||| |||||||| ||| || | ||| |||||||||| ||| |
|
|
| T |
25095932 |
atccccagcacaaggtataccaaaggatatagcaattatttacatcagtagttcaacataaataacaatgattagcctatacccaaacataagaaggggt |
25096031 |
T |
|
| Q |
385 |
tatggcaccaatcatgaaacatataatga |
413 |
Q |
| |
|
| |||||||||||||||||| |||||||| |
|
|
| T |
25096032 |
tctggcaccaatcatgaaacttataatga |
25096060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 413
Target Start/End: Original strand, 25153902 - 25154030
Alignment:
| Q |
287 |
atccccagcacaaggtgtgccaaaggagatagctattaattacttcaatgtttcaacggtaataacaacagttaaccga--ccccaacataagaaagggg |
384 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||| |||| |||| ||| | |||||| |||||||| ||| || | ||| |||||||||| ||| |
|
|
| T |
25153902 |
atccccagcacaaggtataccaaaggatatagcaattatttacatcagtagttcaacataaataacaatgattagcctatacccaaacataagaaggggt |
25154001 |
T |
|
| Q |
385 |
tatggcaccaatcatgaaacatataatga |
413 |
Q |
| |
|
| |||||||||||||||||| |||||||| |
|
|
| T |
25154002 |
tctggcaccaatcatgaaacttataatga |
25154030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 31250960 - 31250924
Alignment:
| Q |
365 |
accccaacataagaaaggggtatggcaccaatcatga |
401 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
31250960 |
acccaaacataagaaagggttatggcaccaatcatga |
31250924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 10383480 - 10383341
Alignment:
| Q |
289 |
ccccagcacaaggtgtgccaaaggagatagctattaattacttcaatgtttcaacggtaataacaacagttaaccga--ccccaacataagaaaggggta |
386 |
Q |
| |
|
||||| || |||||||| |||| |||||||| | ||| ||| ||||||||||| ||||||| || ||||| || | ||| ||||| |||| || | |
|
|
| T |
10383480 |
ccccaacataaggtgtggcaaaagagatagcaaataactacaacaatgtttcaatagtaataataatagttagcctattcccaaacatgagaacaggttt |
10383381 |
T |
|
| Q |
387 |
tggcaccaatcatgaaacatataatgataaacaacaaatt |
426 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
10383380 |
tggcaccaatcatgaaacttataatgataaattacaaatt |
10383341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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