View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0370_low_33 (Length: 268)

Name: NF0370_low_33
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0370_low_33
NF0370_low_33
[»] chr1 (19 HSPs)
chr1 (1-239)||(42724557-42724795)
chr1 (141-208)||(9552461-9552528)
chr1 (141-198)||(32118949-32119005)
chr1 (1-63)||(7375390-7375452)
chr1 (141-211)||(12002197-12002267)
chr1 (87-204)||(4471495-4471611)
chr1 (87-164)||(29523348-29523424)
chr1 (127-211)||(6596486-6596569)
chr1 (142-197)||(18794672-18794728)
chr1 (1-56)||(11066119-11066174)
chr1 (155-193)||(5227306-5227344)
chr1 (147-197)||(26201099-26201149)
chr1 (135-216)||(51244960-51245042)
chr1 (139-211)||(24884363-24884438)
chr1 (1-58)||(28410818-28410875)
chr1 (140-197)||(48025383-48025440)
chr1 (145-197)||(84629-84681)
chr1 (153-197)||(39477849-39477893)
chr1 (4-63)||(42964745-42964807)
[»] chr3 (21 HSPs)
chr3 (1-208)||(19897231-19897439)
chr3 (117-197)||(54677383-54677463)
chr3 (139-197)||(50646237-50646295)
chr3 (148-208)||(41850344-41850404)
chr3 (139-208)||(33194158-33194226)
chr3 (127-180)||(36750574-36750627)
chr3 (88-197)||(42939934-42940042)
chr3 (139-208)||(50038298-50038367)
chr3 (141-193)||(47823580-47823632)
chr3 (145-193)||(53200813-53200861)
chr3 (139-197)||(3152933-3152990)
chr3 (135-197)||(4758956-4759018)
chr3 (139-197)||(9189562-9189619)
chr3 (139-197)||(31583561-31583619)
chr3 (145-211)||(44648536-44648602)
chr3 (139-193)||(45566776-45566829)
chr3 (1-63)||(51057758-51057820)
chr3 (147-197)||(53715996-53716045)
chr3 (149-197)||(14798972-14799020)
chr3 (117-197)||(48169412-48169492)
chr3 (145-197)||(51397975-51398027)
[»] chr4 (15 HSPs)
chr4 (1-193)||(54710862-54711055)
chr4 (135-197)||(12241688-12241750)
chr4 (141-197)||(27653641-27653697)
chr4 (139-197)||(19930679-19930737)
chr4 (139-197)||(22220493-22220551)
chr4 (141-195)||(37445624-37445678)
chr4 (146-208)||(51434396-51434458)
chr4 (139-197)||(52848188-52848246)
chr4 (139-197)||(25231140-25231198)
chr4 (1-59)||(32979886-32979943)
chr4 (139-197)||(34316187-34316245)
chr4 (139-197)||(41920443-41920501)
chr4 (145-198)||(55548361-55548413)
chr4 (109-161)||(20524436-20524488)
chr4 (145-193)||(44855208-44855256)
[»] chr8 (18 HSPs)
chr8 (3-197)||(32414692-32414887)
chr8 (145-208)||(30788889-30788952)
chr8 (1-63)||(9420075-9420137)
chr8 (139-197)||(17920921-17920979)
chr8 (145-197)||(7612463-7612515)
chr8 (141-209)||(42946073-42946143)
chr8 (103-164)||(4529855-4529916)
chr8 (139-208)||(7839412-7839481)
chr8 (1-193)||(22699352-22699545)
chr8 (127-197)||(7421569-7421639)
chr8 (135-173)||(10650737-10650775)
chr8 (139-197)||(11165493-11165551)
chr8 (145-197)||(1774195-1774247)
chr8 (141-193)||(9420219-9420271)
chr8 (129-193)||(9812142-9812206)
chr8 (141-197)||(12339676-12339732)
chr8 (145-197)||(14234354-14234405)
chr8 (145-197)||(32061559-32061611)
[»] chr2 (19 HSPs)
chr2 (139-197)||(35799168-35799226)
chr2 (117-197)||(37724212-37724292)
chr2 (129-197)||(777735-777803)
chr2 (141-193)||(21424621-21424673)
chr2 (153-197)||(32254558-32254602)
chr2 (141-197)||(42004857-42004912)
chr2 (121-176)||(1399819-1399874)
chr2 (150-197)||(1756964-1757011)
chr2 (139-197)||(12566110-12566169)
chr2 (145-208)||(16807653-16807715)
chr2 (145-208)||(16846934-16846996)
chr2 (127-164)||(8450049-8450086)
chr2 (145-198)||(9366255-9366307)
chr2 (129-193)||(13561962-13562027)
chr2 (139-196)||(18719562-18719619)
chr2 (145-198)||(19505941-19505994)
chr2 (145-209)||(45372667-45372732)
chr2 (145-197)||(29411661-29411713)
chr2 (145-197)||(32228147-32228198)
[»] chr7 (13 HSPs)
chr7 (139-208)||(32501877-32501946)
chr7 (153-208)||(16562778-16562833)
chr7 (153-208)||(16602829-16602884)
chr7 (1-59)||(40800244-40800302)
chr7 (145-197)||(41906069-41906121)
chr7 (145-197)||(42121516-42121568)
chr7 (139-197)||(39557288-39557345)
chr7 (129-198)||(24780424-24780492)
chr7 (135-168)||(36807929-36807962)
chr7 (129-197)||(16565218-16565285)
chr7 (129-197)||(16600377-16600444)
chr7 (141-213)||(17869187-17869259)
chr7 (129-208)||(19105119-19105199)
[»] chr5 (12 HSPs)
chr5 (1-52)||(39803689-39803740)
chr5 (145-193)||(4967548-4967596)
chr5 (115-197)||(38910884-38910966)
chr5 (141-197)||(29653645-29653701)
chr5 (145-213)||(34171114-34171182)
chr5 (145-208)||(15776614-15776676)
chr5 (147-209)||(4833770-4833832)
chr5 (145-179)||(9060285-9060319)
chr5 (141-179)||(28316697-28316735)
chr5 (145-193)||(13974246-13974294)
chr5 (139-211)||(15566449-15566521)
chr5 (153-197)||(38369838-38369882)
[»] chr6 (8 HSPs)
chr6 (139-197)||(10520769-10520826)
chr6 (139-208)||(17552375-17552444)
chr6 (141-197)||(34439544-34439600)
chr6 (139-197)||(1502869-1502927)
chr6 (139-197)||(10540638-10540696)
chr6 (139-197)||(24163844-24163901)
chr6 (143-184)||(26405394-26405435)
chr6 (141-193)||(6143054-6143105)
[»] scaffold0565 (1 HSPs)
scaffold0565 (139-193)||(9771-9825)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42724795 - 42724557
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaatgtgttattttaaaaacagtttgccagtaataagtaaggga 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42724795 tactaaaatagtcttgttaactattaatgcatttttcatcattataaattaaattagaatgtgttattttaaaaacagtttgccagtaataagtaaggga 42724696  T
Q  101 tactattgaaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcg 200  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42724695 tactattgaaaaataacaattaatggtacattaaaaagtgaaaatgatattcattttaaaacaattttattttgttaaaatgacattcattttaaaatcg 42724596  T
Q  201 agagagtaatacaaattattgcttttaaccacaagtaca 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42724595 agagagtaatacaaattattgcttttaaccacaagtaca 42724557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 9552461 - 9552528
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||||||||| |||||||||||||||| |||| ||||| ||||| |||||||||||| ||| |||||    
T  9552461 aaaatgacattcattttaaaacaatttttttttattaaagtgacactcattttaaaatagagggagta 9552528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 32119005 - 32118949
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaat 198  Q
    |||||||||||||||||||||||||||| ||||  |||| ||||||||||||||||||    
T  32119005 aaaatgacatttattttaaaacaatttt-tttttctaaagtgacattcattttaaaat 32118949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7375452 - 7375390
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaatgtg 63  Q
    |||||||||||||||||||||||||  |||||||   |||||||||||||||| || ||||||    
T  7375452 tactaaaatagccttgttaactatttgtgcatttccgatcattataaattaaagtaaaatgtg 7375390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 12002267 - 12002197
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagtaata 211  Q
    ||||||||||| |||||||||||||||| ||| | ||||| |||| |||||||||||  ||| ||||||||    
T  12002267 aaaatgacattcattttaaaacaattttttttagctaaaacgacactcattttaaaacggagggagtaata 12002197  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 4471495 - 4471611
Alignment:
Q  87 taataagtaagggatactattgaaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacat 186  Q
    |||||| |||||| |||||||| |||| | |||  ||| |||||||  ||||||| |||||||||| ||||||||||| ||  ||||  |||| |||||     
T  4471495 taataattaaggg-tactattggaaaaaagtaagcaatagtacattgaaaagtgagaatgacattttttttaaaacaaattattttttctaaagtgacac 4471593  T
Q  187 tcattttaaaatcgagag 204  Q
    |||||||||||| |||||    
T  4471594 tcattttaaaatggagag 4471611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 29523348 - 29523424
Alignment:
Q  87 taataagtaagggatactattgaaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaacaa 164  Q
    |||||| |||||| ||||||||||||| | |||||||| |||||||  ||||||| ||||||||| ||||| ||||||    
T  29523348 taataattaaggg-tactattgaaaaaaagtaattaatagtacattgaaaagtgagaatgacattcattttgaaacaa 29523424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 6596569 - 6596486
Alignment:
Q  127 tacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagtaata 211  Q
    ||||||| | |||| || |||||||||||||||||  ||||| |||| |||||| |||||| |||||||||| ||| ||||||||    
T  6596569 tacattaaacagtgcaagtgacatttattttaaaa-tatttttttttattaaaacgacatttattttaaaatggagggagtaata 6596486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 18794672 - 18794728
Alignment:
Q  142 aaatgacatttattttaaaacaat-tttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||||||||||||||||||| ||| ||||| ||||| |||| |||||||||||    
T  18794672 aaatgacatttattttaaaacaatattttttttgctaaaacgacaatcattttaaaa 18794728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11066174 - 11066119
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaatta 56  Q
    ||||||||||| || |||| |||||  ||||||| |||||||||||||||||||||    
T  11066174 tactaaaatagtctcgttagctattggtgcatttgtcatcattataaattaaatta 11066119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 5227306 - 5227344
Alignment:
Q  155 tttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  5227306 tttaaaacaattttgttttgttaaaatgacattcgtttt 5227344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 26201149 - 26201099
Alignment:
Q  147 acatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||| |||||||||| ||||||||||| |||| |||||||||||    
T  26201149 acattaattttgaaacaatttttttttgttaaaacgacactcattttaaaa 26201099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 51244960 - 51245042
Alignment:
Q  135 aaagtgaaaatgacatttattttaaaaca-attttattttgttaaaatgacattcattttaaaatcgagagagtaatacaaat 216  Q
    ||||||||| |||| ||||||||||||||  |||| ||||  ||||| ||||||||||||||||  || ||||||||| ||||    
T  51244960 aaagtgaaagtgacttttattttaaaacatttttttttttaataaaacgacattcattttaaaacggaaagagtaatataaat 51245042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 24884438 - 24884363
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgtt---aaaatgacattcattttaaaatcgagagagtaata 211  Q
    ||||| ||||||||||||||||| |||||| |||| ||   |||| ||||||||||||||||  ||| ||||||||    
T  24884438 tgaaagtgacatttattttaaaataattttttttttttgctaaaacgacattcattttaaaacggagggagtaata 24884363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28410818 - 28410875
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattaga 58  Q
    |||||||||| | ||||||||||||  |||||||  ||||||||||||||||| ||||    
T  28410818 tactaaaataacattgttaactattggtgcatttcccatcattataaattaaagtaga 28410875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 48025383 - 48025440
Alignment:
Q  140 gaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||| ||||||| ||||| |||||||||| ||||| ||||| |||| |||||||||||    
T  48025383 gaaagtgacattcattttgaaacaatttttttttgctaaaacgacactcattttaaaa 48025440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 84629 - 84681
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| |||||||||||||||| ||||| |||| ||||| ||| |||||||    
T  84629 tgacattcattttaaaacaatttttttttgctaaagtgacactcaatttaaaa 84681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 39477849 - 39477893
Alignment:
Q  153 attttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||||||||||||||||| |||||  ||| |||||||||||    
T  39477849 attttaaaacaattttattttgctaaaacaacactcattttaaaa 39477893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 42964807 - 42964745
Alignment:
Q  4 taaaatagccttgttaactattaat---gcatttttcatcattataaattaaattagaatgtg 63  Q
    ||||||||  |||||||||||||||   |||||| |||||||||||||||||| || ||||||    
T  42964807 taaaatagttttgttaactattaataatgcatttctcatcattataaattaaagtaaaatgtg 42964745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 19897439 - 19897231
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaatgtgttattttaaaaacagtttgcc-agtaataagtaaggg 99  Q
    ||||||||||||||  |||||||||  ||||||| ||||||||||||||||||||| ||| ||||| ||| |||  ||  |||  ||| |||| ||||||    
T  19897439 tactaaaatagcctaattaactattggtgcatttctcatcattataaattaaattaaaatatgttactttgaaagtagcatgcatagtgataattaaggg 19897340  T
Q  100 atactattgaaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatc 199  Q
     |  ||||| || | | ||||| || || ||||  ||||||||||| ||||||||||||||||||||| || ||| |||||||||| ||||||||||||     
T  19897339 gttatattggaagaaagtaattgatagtgcattgaaaagtgaaaataacatttattttaaaacaatttcatgttgctaaaatgacactcattttaaaatg 19897240  T
Q  200 gagagagta 208  Q
    ||| |||||    
T  19897239 gagggagta 19897231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 54677463 - 54677383
Alignment:
Q  117 taattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||||||||||  ||||||||||||||||| || ||||||||||||||||||| |||||||||| |||||||||||    
T  54677463 taattaatggtacattgaaaagtgaaaatgacattcatcttaaaacaattttattttggtaaaatgacactcattttaaaa 54677383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 50646237 - 50646295
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||||||||| |||||||||| ||||||||||| |||| |||||||||||    
T  50646237 tgaaagtgacatttattttgaaacaatttttttttgttaaaacgacactcattttaaaa 50646295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 41850404 - 41850344
Alignment:
Q  148 catttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    |||| |||||||||||||| | ||| | ||||||||||||||||||||||| |||||||||    
T  41850404 cattcattttaaaacaattatttttggctaaaatgacattcattttaaaatggagagagta 41850344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 33194158 - 33194226
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||| ||| |||||    
T  33194158 tgaaagtgacattcattttaaaacaatttt-ttttgctaaaacgacactcattttaaaatggagggagta 33194226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 36750627 - 36750574
Alignment:
Q  127 tacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaa 180  Q
    ||||||| ||| ||||||||| ||||||||||||| || |||||||||||||||    
T  36750627 tacattaaaaaatgaaaatgatatttattttaaaataaatttattttgttaaaa 36750574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 42940042 - 42939934
Alignment:
Q  88 aataagtaagggatactattgaaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacatt 187  Q
    ||||| |||||| |||||||| |||| | |||||||| || ||||  ||| ||||||||||||| ||||| |||||| ||  ||||||||||  |||| |    
T  42940042 aataattaaggg-tactattggaaaaaagtaattaatagtgcattgaaaaatgaaaatgacattcattttgaaacaaattatttttgttaaagcgacact 42939944  T
Q  188 cattttaaaa 197  Q
    ||||||||||    
T  42939943 cattttaaaa 42939934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 50038298 - 50038367
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||  |||| |||||||||||  |||||||||    
T  50038298 tgaaagtgacattcattttaaaacaatttttttttgctaaagcgacactcattttaaaacggagagagta 50038367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 47823580 - 47823632
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    |||||||||||||||||||||||||||| |||  ||||| ||||||| |||||    
T  47823580 aaaatgacatttattttaaaacaattttgtttgattaaagtgacatttatttt 47823632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 53200813 - 53200861
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    ||||||| |||||||||||||||| ||||| ||||| ||||||||||||    
T  53200813 tgacattcattttaaaacaatttttttttgctaaaacgacattcatttt 53200861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 3152933 - 3152990
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||| ||||| |||||||||| ||||| |||||||||| |||||||||||    
T  3152933 tgaaagtgacattcattttgaaacaatttt-ttttgctaaaatgacactcattttaaaa 3152990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 4759018 - 4758956
Alignment:
Q  135 aaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||| |||||||||||||||||||||||  ||||  ||||  |||| |||||||||||    
T  4759018 aaagtgaaagtgacatttattttaaaacaatttctttttactaaagcgacactcattttaaaa 4758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 9189562 - 9189619
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||| ||||||||| |||||| |||| ||||||||||| |||||||||||    
T  9189562 tgaaagtgacattcattttaaaataatttt-ttttattaaaatgacactcattttaaaa 9189619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 31583561 - 31583619
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||| |||||||||||||||| ||||  ||||| |||| |||||||||||    
T  31583561 tgaaagtgacattaattttaaaacaatttttttttactaaaacgacactcattttaaaa 31583619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 44648536 - 44648602
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagtaata 211  Q
    ||||||| |||||||||||||||| ||||| ||||| |||| ||||||| |||  ||| ||||||||    
T  44648536 tgacattcattttaaaacaatttttttttgctaaaacgacactcattttgaaacggagggagtaata 44648602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 45566829 - 45566776
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    ||||||||||||| ||||||||||||||||| ||  |||||| ||||||||||||    
T  45566829 tgaaaatgacattcattttaaaacaatttta-ttgattaaaacgacattcatttt 45566776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 51057758 - 51057820
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaatgtg 63  Q
    ||||||||||  |||||||||||||  |||||||  ||||||||||||||||| || ||||||    
T  51057758 tactaaaataatcttgttaactattggtgcatttcccatcattataaattaaagtataatgtg 51057820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 53716045 - 53715996
Alignment:
Q  147 acatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||||||| |||| |||||||||||||||| |||||||||||    
T  53716045 acattcattttaaaacattttt-ttttgttaaaatgacactcattttaaaa 53715996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 14798972 - 14799020
Alignment:
Q  149 atttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||| |||||||||  |||||||||||||||| | |||||||||    
T  14798972 atttattttgaaacaatttatttttgttaaaatgacaattattttaaaa 14799020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 48169492 - 48169412
Alignment:
Q  117 taattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||| |||||||  ||||||||||||||||| ||||| ||| ||  |  || ||||||| ||||| |||||||||||    
T  48169492 taattaatagtacattgaaaagtgaaaatgacattcattttgaaataaactatttgtgttaaagtgacactcattttaaaa 48169412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 51398027 - 51397975
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||||||| |||||||||| ||| | ||||| |||| |||||||||||    
T  51398027 tgacatttattttgaaacaattttttttggctaaaacgacactcattttaaaa 51397975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 54710862 - 54711055
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaatgtgttattttaaaaacagtttgc-cagtaataagtaaggg 99  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||||| || |||||| || |||  ||  ||| |||  |||||||| ||||||    
T  54710862 tactaaaatagccttgttaactattgatgcatttcccatcattataaattaaagtaaaatgtggtactttggaagtagtgtgcatagtaataattaaggg 54710961  T
Q  100 atacta-ttgaaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
     || || ||| |||||  |||||||| || | ||  ||||||| ||||||||| ||||| ||||||||| |||||| ||||| |||| |||||||    
T  54710962 gtagtatttggaaaat-gtaattaatagtgcgttgaaaagtgagaatgacattcattttgaaacaatttcattttgctaaaacgacagtcatttt 54711055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 12241688 - 12241750
Alignment:
Q  135 aaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| ||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||    
T  12241688 aaagtgagaatgacattcattttaaaataattttattttgctaaaatgacactcattttaaaa 12241750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 27653697 - 27653641
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||||||||||||||||||||||  ||| ||||||| |||| |||||||||||    
T  27653697 aaaatgacatttattttaaaacaatttattttagttaaaacgacactcattttaaaa 27653641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 19930737 - 19930679
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||| ||||| |||||||||| ||||| ||||| ||||||||||||||||    
T  19930737 tgaaagtgacattcattttgaaacaatttttttttgctaaaacgacattcattttaaaa 19930679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 22220493 - 22220551
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||||||||||||| |||||||||| ||||| |||| ||||| |||||| ||||    
T  22220493 tgaaaatgacatttattttgaaacaatttttttttgctaaagtgacactcatttcaaaa 22220551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 37445678 - 37445624
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaa 195  Q
    ||||||||||| |||||||||||||||| ||||  |||| |||||||||||||||    
T  37445678 aaaatgacattcattttaaaacaatttttttttactaaagtgacattcattttaa 37445624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 51434396 - 51434458
Alignment:
Q  146 gacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    |||||| |||||||||||||||| ||||||||||  |||| |||||||||||  |||||||||    
T  51434396 gacattcattttaaaacaatttttttttgttaaagcgacactcattttaaaacggagagagta 51434458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 52848188 - 52848246
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||    
T  52848188 tgaaagtgacattcattttaaaacaatttttttttgctaaaacgacactcattttaaaa 52848246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 25231198 - 25231140
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||  |||| |||||||||||    
T  25231198 tgaaagtgacattcattttaaaacaatttttttttgctaaagcgacactcattttaaaa 25231140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32979886 - 32979943
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaa 59  Q
    ||||||||||||||| ||||||||| || |||||  ||||||||||||||||| |||||    
T  32979886 tactaaaatagccttattaactattgat-catttcccatcattataaattaaagtagaa 32979943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 34316245 - 34316187
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||||||||||||| |||||| |||  |||||| |||| |||||||||||    
T  34316245 tgaaagtgacatttattttaaaataattttgtttaattaaaacgacactcattttaaaa 34316187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 41920443 - 41920501
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||||||||||||||||||||||||| |||   |||||  ||| |||||||||||    
T  41920443 tgaaaatgacatttattttaaaacaattttttttaactaaaacaacactcattttaaaa 41920501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 55548361 - 55548413
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaat 198  Q
    ||||| ||||||| |||||||||| ||||||||||| |||| ||||||||||||    
T  55548361 tgacacttattttgaaacaatttt-ttttgttaaaacgacactcattttaaaat 55548413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 20524436 - 20524488
Alignment:
Q  109 aaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaa 161  Q
    ||||||||||||||||| || |||  ||||||||||||| |||||||| ||||    
T  20524436 aaaaataataattaatgttatattgaaaagtgaaaatgaaatttatttcaaaa 20524488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 44855256 - 44855208
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    ||||||||||||  |||||||||| ||||| |||||||||| |||||||    
T  44855256 tgacatttatttcgaaacaatttttttttgctaaaatgacactcatttt 44855208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 32414887 - 32414692
Alignment:
Q  3 ctaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaatgtgttattttaaaaacagtttgc-cagtaataagtaagggat 101  Q
    ||||||||||||||||||||||| ||||||||| ||||||  |||||||||||| |||||   | |||  ||  ||| |||  |||||||| | || | |    
T  32414887 ctaaaatagccttgttaactattgatgcattttccatcatcctaaattaaattaaaatgtaaaactttggaagtagtgtgcatagtaataatttagaggt 32414788  T
Q  102 actattgaaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||  ||| | |||||||| || ||||  ||| | ||||||||||| ||||| |||||||||| ||||  ||||| |||||| |||||||||    
T  32414787 actattgggaaaaagtaattaatagtgcattggaaactaaaaatgacattcattttgaaacaatttttttttactaaaacgacatttattttaaaa 32414692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 30788952 - 30788889
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||| |||||||||| |||||||||    
T  30788952 tgacatttattttaaaacattttttttttgctaaagtgacatttattttaaaatggagagagta 30788889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9420075 - 9420137
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaatgtg 63  Q
    |||||||||||||||||||||||||  |||||||  ||||||||||||||||| || ||||||    
T  9420075 tactaaaatagccttgttaactattggtgcatttcccatcattataaattaaagtaaaatgtg 9420137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 17920979 - 17920921
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  17920979 tgaaagtgacattcattttaaaacaatttttttttgctaaaacgacattcattttaaaa 17920921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 7612515 - 7612463
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| |||||||||||||||| |||||||||| ||||| |||||||||||    
T  7612515 tgacattcattttaaaacaatttttttttgttaaagtgacactcattttaaaa 7612463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 42946143 - 42946073
Alignment:
Q  141 aaaatgacatttattttaaaacaa--ttttattttgttaaaatgacattcattttaaaatcgagagagtaa 209  Q
    ||||||||||| ||||||||||||  |||| |||||||||| ||||| |||||||||||| | ||||||||    
T  42946143 aaaatgacattcattttaaaacaacttttttttttgttaaagtgacactcattttaaaatggtgagagtaa 42946073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 4529916 - 4529855
Alignment:
Q  103 ctattgaaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaacaa 164  Q
    ||||||||||| | |||||||| |||||||  ||||||| ||||||||| ||||||||||||    
T  4529916 ctattgaaaaaaagtaattaatagtacattgaaaagtgagaatgacattcattttaaaacaa 4529855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 7839481 - 7839412
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||| ||||||| ||||| |||||||||| ||||| ||||| |||| |||||||||||  |||||||||    
T  7839481 tgaaagtgacattcattttgaaacaatttttttttgctaaaacgacactcattttaaaacagagagagta 7839412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 22699545 - 22699352
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaatgtgttattttaaaaacagtttg-ccagtaataagtaaggg 99  Q
    |||||||||| ||||||||| | ||  ||||||| |||||||||||||||||| || |||||| || |||| ||   || ||   ||||||||  |||||    
T  22699545 tactaaaataaccttgttaattgttggtgcatttctcatcattataaattaaagtaaaatgtggtactttagaagtcgtgtgtatagtaataatcaaggg 22699446  T
Q  100 atactattgaaaaataataattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
     |||||||| |||| | ||||||||  | ||||  ||| ||||  ||||||  ||||| |||||||| | ||| ||||||| ||||||||||||    
T  22699445 gtactattggaaaaaagtaattaataatgcattggaaactgaaggtgacatgcattttgaaacaattatttttggttaaaacgacattcatttt 22699352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 7421569 - 7421639
Alignment:
Q  127 tacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| |||||| || ||||||| ||||||||| |||||||||| | ||||| || | |||||||||||    
T  7421569 tacattaaaaagtgtaactgacattcattttaaaataattttatttcgctaaaacgatactcattttaaaa 7421639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 10650737 - 10650775
Alignment:
Q  135 aaagtgaaaatgacatttattttaaaacaattttatttt 173  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  10650737 aaagtgaaaatgacatttattttaaaacacttttttttt 10650775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 11165551 - 11165493
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||| |||||| ||||||||| |||||| ||||| |||| ||||| |||||||||||    
T  11165551 tgaaaacgacattcattttaaaataatttttttttgctaaagtgacactcattttaaaa 11165493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 1774195 - 1774247
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| |||||||||||||||| ||| | |||| ||||| |||||||||||    
T  1774195 tgacattcattttaaaacaattttttttggctaaagtgacactcattttaaaa 1774247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 9420219 - 9420271
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    ||||||| ||| ||||||||| |||||||||||| |||||||| | |||||||    
T  9420219 aaaatgatattcattttaaaataattttattttgctaaaatgatactcatttt 9420271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 9812206 - 9812142
Alignment:
Q  129 cattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    ||||| ||| ||||| ||||||| |||||||||||||||| ||||| ||||| || | |||||||    
T  9812206 cattagaaactgaaagtgacattcattttaaaacaatttttttttgctaaaacgatactcatttt 9812142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 12339732 - 12339676
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||||| ||||||||| | |||| ||||| |||| | |||||||||||||||    
T  12339732 aaaatgacattcattttaaaatattttttttttgctaaagtaacattcattttaaaa 12339676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 14234354 - 14234405
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||    
T  14234354 tgacattcattttaaaacaatttt-ttttgctaaaacgacactcattttaaaa 14234405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 32061559 - 32061611
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| |||||||||||||||| |||  ||||| ||||| |||||||||||    
T  32061559 tgacattcattttaaaacaattttttttatttaaagtgacactcattttaaaa 32061611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 35799226 - 35799168
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  35799226 tgaaagtgacatttattttgaaacaatttttttttgctaaaatgacattcattttaaaa 35799168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 37724292 - 37724212
Alignment:
Q  117 taattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||| |||||||  ||||||||||||||||||||||| |||||| ||  ||||| ||||  |||| |||||||||||    
T  37724292 taattaatagtacattgaaaagtgaaaatgacatttattttgaaacaaattatttttgctaaagcgacactcattttaaaa 37724212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 777803 - 777735
Alignment:
Q  129 cattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||| ||||||||||||| |||||||||||||||  ||| | |||||||||| ||| |||||||    
T  777803 cattagaaattgaaaatgacattcattttaaaacaatttgttttggctaaaatgacactcactttaaaa 777735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 21424673 - 21424621
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    |||||||||||| ||||||||||||||  ||||| |||||||| |||||||||    
T  21424673 aaaatgacatttgttttaaaacaatttctttttgctaaaatgatattcatttt 21424621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 32254602 - 32254558
Alignment:
Q  153 attttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||    
T  32254602 attttgaaacaattttattttgctaaaatgacactcattttaaaa 32254558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 42004912 - 42004857
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||||| ||||||||| |||||| |||| ||||||||||| |||||||||||    
T  42004912 aaaatgacattcattttaaaataatttt-ttttattaaaatgacactcattttaaaa 42004857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 1399819 - 1399874
Alignment:
Q  121 taatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgtt 176  Q
    |||| |||||||| |||||  || |||||||||||||||||||||||| |||||||    
T  1399819 taattgtacattaaaaagttgaagtgacatttattttaaaacaatttttttttgtt 1399874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 1756964 - 1757011
Alignment:
Q  150 tttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||||||||| ||| | |||||||| |||||||||||||||||    
T  1756964 tttattttaaaacaaatttttattgttaaagtgacattcattttaaaa 1757011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 12566110 - 12566169
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttatttt-gttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||| ||||| |||||||||| |||| |||||||||||| |||||||||||    
T  12566110 tgaaagtgacattcattttgaaacaattttttttttgttaaaatgacactcattttaaaa 12566169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 16807653 - 16807715
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||||||||||| |||||||||| |||| |||||| |||| |||||||||||  |||||||||    
T  16807653 tgacatttattttgaaacaatttt-ttttattaaaacgacactcattttaaaacggagagagta 16807715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 16846934 - 16846996
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||||||||||| |||||||||| |||| |||||| |||| |||||||||||  |||||||||    
T  16846934 tgacatttattttgaaacaatttt-ttttattaaaacgacactcattttaaaacggagagagta 16846996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 8450049 - 8450086
Alignment:
Q  127 tacattataaagtgaaaatgacatttattttaaaacaa 164  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  8450049 tacattaaaaagtaaaaatgacatttattttaaaacaa 8450086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 9366255 - 9366307
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaat 198  Q
    |||||||||||||||||||||||| ||||| ||||| |||| | ||||||||||    
T  9366255 tgacatttattttaaaacaatttt-ttttgctaaaacgacacttattttaaaat 9366307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 13562027 - 13561962
Alignment:
Q  129 cattataaagtgaaaatgacatttattttaaaacaattttatttt-gttaaaatgacattcatttt 193  Q
    ||||| ||| ||||| ||||||||||||| |||||| |||||||| | |||||||||| |||||||    
T  13562027 cattagaaactgaaagtgacatttattttgaaacaaatttattttggctaaaatgacactcatttt 13561962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 18719562 - 18719619
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaa 196  Q
    ||||| ||||||| |||| ||||||||||| ||| | |||||||||| ||||||||||    
T  18719562 tgaaagtgacattcatttcaaaacaattttttttggctaaaatgacactcattttaaa 18719619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 19505994 - 19505941
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaat 198  Q
    ||||||||||||| |||||| ||| ||| |||||| ||||| ||||||||||||    
T  19505994 tgacatttattttgaaacaaatttttttagttaaagtgacactcattttaaaat 19505941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 45372667 - 45372732
Alignment:
Q  145 tgacatttattttaaaacaa-ttttattttgttaaaatgacattcattttaaaatcgagagagtaa 209  Q
    ||||||| |||||||||||| |||| ||||| |||| ||||||||||||| |||| ||| ||||||    
T  45372667 tgacattcattttaaaacaattttttttttgctaaagtgacattcattttgaaatggagggagtaa 45372732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 29411713 - 29411661
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| |||||||||||||||||| |   |||||||||||||||| |||||    
T  29411713 tgacattcattttaaaacaattttatctaactaaaatgacattcattataaaa 29411661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 32228147 - 32228198
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| ||||||||||||||| |||||| ||||| |||| |||||||||||    
T  32228147 tgacattcattttaaaacaattt-attttgctaaaacgacactcattttaaaa 32228198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 32501877 - 32501946
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||| ||| |||||||||||||||||||| ||||||||||| |||| |||||||||||| ||| |||||    
T  32501877 tgaaagtgatatttattttaaaacaatttttttttgttaaaacgacactcattttaaaatggagggagta 32501946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 16562778 - 16562833
Alignment:
Q  153 attttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    |||||||||||||| | |||||||||||||||| |||||||||||  |||||||||    
T  16562778 attttaaaacaattattttttgttaaaatgacactcattttaaaacagagagagta 16562833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 16602884 - 16602829
Alignment:
Q  153 attttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    |||||||||||||| | |||||||||||||||| |||||||||||  |||||||||    
T  16602884 attttaaaacaattattttttgttaaaatgacactcattttaaaacagagagagta 16602829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40800302 - 40800244
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaaattagaa 59  Q
    |||||||| | ||||||||||||||  ||||||| |||||||||||||||||| |||||    
T  40800302 tactaaaacaaccttgttaactattggtgcatttctcatcattataaattaaagtagaa 40800244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 41906069 - 41906121
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||||||||||||||| ||| ||| | |||| |||||||||||||||||    
T  41906069 tgacatttattttaaaacaaatttttttagctaaagtgacattcattttaaaa 41906121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 42121568 - 42121516
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||| ||||| |||||||||| ||||| |||| |||||||||||||||||    
T  42121568 tgacattcattttgaaacaatttttttttgctaaagtgacattcattttaaaa 42121516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 39557345 - 39557288
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||||||||||||| |||||| ||| ||||||| |||| |||||||||||    
T  39557345 tgaaagtgacatttattttaaaataatttt-tttagttaaaacgacactcattttaaaa 39557288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 24780424 - 24780492
Alignment:
Q  129 cattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaat 198  Q
    ||||| ||| ||||| ||||||| ||||| |||||||||| |||| |||||| |||| ||||||||||||    
T  24780424 cattagaaactgaaagtgacattcattttgaaacaatttt-ttttattaaaacgacactcattttaaaat 24780492  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 36807962 - 36807929
Alignment:
Q  135 aaagtgaaaatgacatttattttaaaacaatttt 168  Q
    |||| |||||||||||||||||||||||||||||    
T  36807962 aaagcgaaaatgacatttattttaaaacaatttt 36807929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 16565218 - 16565285
Alignment:
Q  129 cattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||| ||||||||||||| ||||| |||||||||| ||| ||||||| |||| | |||||||||    
T  16565218 cattagaaactgaaaatgacattcattttgaaacaatttt-tttagttaaaacgacacttattttaaaa 16565285  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 16600444 - 16600377
Alignment:
Q  129 cattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||| ||||||||||||| ||||| |||||||||| ||| ||||||| |||| | |||||||||    
T  16600444 cattagaaactgaaaatgacattcattttgaaacaatttt-tttagttaaaacgacacttattttaaaa 16600377  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 17869259 - 17869187
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagtaataca 213  Q
    ||||||||||| ||||| |||||| ||| ||| | |||| ||||| |||||||||||  ||| ||||||||||    
T  17869259 aaaatgacattcattttgaaacaaatttttttcgctaaagtgacactcattttaaaacggagggagtaataca 17869187  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 19105119 - 19105199
Alignment:
Q  129 cattataaagtgaaaatgacatttattttaaaacaa-ttttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||| ||| ||||| ||||||| |||||||||||| |||| ||||| ||||| |||| ||||||| |||| ||| |||||    
T  19105119 cattaaaaactgaaagtgacattcattttaaaacaattttttttttgctaaaacgacactcattttgaaatggagggagta 19105199  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39803689 - 39803740
Alignment:
Q  1 tactaaaatagccttgttaactattaatgcatttttcatcattataaattaa 52  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  39803689 tactaaaatagctttgttaactattgatgcattttccatcattataaattaa 39803740  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 4967548 - 4967596
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  4967548 tgacattcattttaaaacaatttttttttgttaaaatgacactcatttt 4967596  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 38910966 - 38910884
Alignment:
Q  115 aataattaatggtacattataaagtgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||||| | |||||  ||||||| ||||||||  ||||||||||||||||||| ||| ||| ||| | |||||||||||    
T  38910966 aataattaataggacattgaaaagtgagaatgacatcaattttaaaacaattttattctgtcaaagtgatactcattttaaaa 38910884  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 29653645 - 29653701
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||||| |||||  ||||||||| ||||||||||| |||| |||||||||||    
T  29653645 aaaatgacattcattttgcaacaatttttttttgttaaaacgacactcattttaaaa 29653701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 34171182 - 34171114
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagtaataca 213  Q
    ||||||| |||||||||||||||| ||||  ||||| |||| |||||||||||| |||  |||||||||    
T  34171182 tgacattcattttaaaacaattttttttttataaaacgacactcattttaaaatggaggaagtaataca 34171114  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 15776614 - 15776676
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||||| |||||||||||||||| ||||  |||||||||| |||||||||||  |||||||||    
T  15776614 tgacattcattttaaaacaatttt-ttttactaaaatgacactcattttaaaacggagagagta 15776676  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 4833770 - 4833832
Alignment:
Q  147 acatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagtaa 209  Q
    ||||| ||||| |||||||||| ||||| ||||  ||||||||||||||||| ||| ||||||    
T  4833770 acattcattttgaaacaatttttttttgctaaagcgacattcattttaaaatggagggagtaa 4833832  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 9060285 - 9060319
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaa 179  Q
    |||||||||||||||||||||||| ||||||||||    
T  9060285 tgacatttattttaaaacaatttttttttgttaaa 9060319  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 28316735 - 28316697
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaa 179  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  28316735 aaaatgacatttattttgaaacaatttttttttgttaaa 28316697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 13974294 - 13974246
Alignment:
Q  145 tgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    ||||||| ||||||||| |||||| |||||||||| | |||||||||||    
T  13974294 tgacattcattttaaaataatttttttttgttaaagtaacattcatttt 13974246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 15566521 - 15566449
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagtaata 211  Q
    |||||| |||||||||||| |||||| ||| ||||| ||||  |||| |||||||||||  ||| ||||||||    
T  15566521 tgaaaacgacatttattttgaaacaaattttttttgctaaagcgacactcattttaaaacggagggagtaata 15566449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 38369882 - 38369838
Alignment:
Q  153 attttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    |||||||||||||||| ||||  ||||| ||||||||||||||||    
T  38369882 attttaaaacaatttttttttactaaaacgacattcattttaaaa 38369838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 10520769 - 10520826
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| |||||||||||||||||||||||| ||| | |||||||||| |||||||||||    
T  10520769 tgaaagtgacatttattttaaaacaatttt-tttagctaaaatgacactcattttaaaa 10520826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 17552375 - 17552444
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaatcgagagagta 208  Q
    ||||||||||||| ||||  |||||||||| ||||  ||||| ||||||||||||||||| ||| |||||    
T  17552375 tgaaaatgacattcatttcgaaacaatttttttttactaaaacgacattcattttaaaatagagggagta 17552444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 34439544 - 34439600
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||||| ||||| |||||||||| |||  ||||| |||||||||||||||||    
T  34439544 aaaatgacattcattttgaaacaattttttttgattaaagtgacattcattttaaaa 34439600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 1502869 - 1502927
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||||||||||| ||||||||||| |||| ||||  ||||| |||| |||||||||||    
T  1502869 tgaaaatgacattaattttaaaacattttttttttactaaaacgacactcattttaaaa 1502927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 10540638 - 10540696
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||||||||| |||||||||| ||| | ||||| |||| |||||||||||    
T  10540638 tgaaagtgacatttattttgaaacaattttttttagctaaaacgacactcattttaaaa 10540696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 24163844 - 24163901
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcattttaaaa 197  Q
    ||||| ||||||| |||||||||||||||| ||| | |||||||||| |||||||||||    
T  24163844 tgaaagtgacattcattttaaaacaatttt-tttggctaaaatgacactcattttaaaa 24163901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 26405394 - 26405435
Alignment:
Q  143 aatgacatttattttaaaacaattttattttgttaaaatgac 184  Q
    ||||||||| ||||||||| |||||||||||| |||||||||    
T  26405394 aatgacattcattttaaaataattttattttgctaaaatgac 26405435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 6143105 - 6143054
Alignment:
Q  141 aaaatgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    ||||||||||| |||||||||||||||| ||| | |||| |||||||||||||    
T  6143105 aaaatgacattcattttaaaacaatttt-tttggctaaagtgacattcatttt 6143054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 9771 - 9825
Alignment:
Q  139 tgaaaatgacatttattttaaaacaattttattttgttaaaatgacattcatttt 193  Q
    ||||||||||||| |||||||||||||||| ||| | ||||| |||| |||||||    
T  9771 tgaaaatgacattcattttaaaacaattttttttggctaaaacgacagtcatttt 9825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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