View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0370_low_35 (Length: 263)
Name: NF0370_low_35
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_35 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 57 - 263
Target Start/End: Original strand, 48593045 - 48593251
Alignment:
| Q |
57 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593045 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
48593144 |
T |
|
| Q |
157 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggacgattgtgtggttgatg |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48593145 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
48593244 |
T |
|
| Q |
257 |
gtaacat |
263 |
Q |
| |
|
||||||| |
|
|
| T |
48593245 |
gtaacat |
48593251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 57 - 263
Target Start/End: Original strand, 48597656 - 48597862
Alignment:
| Q |
57 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597656 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
48597755 |
T |
|
| Q |
157 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggacgattgtgtggttgatg |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48597756 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
48597855 |
T |
|
| Q |
257 |
gtaacat |
263 |
Q |
| |
|
||||||| |
|
|
| T |
48597856 |
gtaacat |
48597862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 260
Target Start/End: Complemental strand, 23231213 - 23231010
Alignment:
| Q |
57 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
156 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||| || | |||| ||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
23231213 |
atcagaactgtttaacaatccaagggtgttgaaaaaagctcaagaggaggtagagagagttgtaggaaaggaaagattagtgtgtgaagaagacagtcca |
23231114 |
T |
|
| Q |
157 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggacgattgtgtggttgatg |
256 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
23231113 |
aaccttccttatatacatgccatcataaaagaaaccatgaggcttcaccctccgataccgatgattatgaggaaaggaatggaagattgtgttgttgatg |
23231014 |
T |
|
| Q |
257 |
gtaa |
260 |
Q |
| |
|
|||| |
|
|
| T |
23231013 |
gtaa |
23231010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 23223466 - 23223303
Alignment:
| Q |
59 |
cagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaa |
158 |
Q |
| |
|
|||||||||| |||||||||| || ||||| ||||||||||| |||||||| | | | | | ||||||||||| || ||||||| |||| |||||| |
|
|
| T |
23223466 |
cagaactgttcaacaatccaatagtactgaagaaagcacaagaagaggtggagagaataatagggaaggaaagactagtatgtgaagcagacattccaaa |
23223367 |
T |
|
| Q |
159 |
ccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgatt |
222 |
Q |
| |
|
||||||||||||||| || || |||||||||||| |||||||||| || || ||||||||||| |
|
|
| T |
23223366 |
ccttccttatatacaagccattataaaagaaacattgaggcttcacccaccactaccgatgatt |
23223303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1869 times since January 2019
Visitors: 3094