View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0370_low_38 (Length: 251)

Name: NF0370_low_38
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0370_low_38
NF0370_low_38
[»] scaffold0182 (2 HSPs)
scaffold0182 (109-251)||(16771-16913)
scaffold0182 (37-78)||(16699-16740)
[»] chr7 (17 HSPs)
chr7 (109-243)||(21750594-21750728)
chr7 (109-251)||(18683782-18683924)
chr7 (109-251)||(22962372-22962514)
chr7 (109-243)||(30839285-30839419)
chr7 (109-251)||(42908173-42908315)
chr7 (109-251)||(32546000-32546142)
chr7 (109-251)||(37103270-37103412)
chr7 (109-243)||(2471803-2471937)
chr7 (109-243)||(29015109-29015243)
chr7 (112-243)||(31425820-31425950)
chr7 (109-243)||(27062415-27062549)
chr7 (113-243)||(29157161-29157291)
chr7 (109-243)||(43218091-43218225)
chr7 (109-243)||(28309301-28309435)
chr7 (30-78)||(21750515-21750563)
chr7 (109-243)||(27062951-27063082)
chr7 (194-243)||(44845325-44845374)
[»] chr8 (8 HSPs)
chr8 (109-243)||(4594286-4594420)
chr8 (109-251)||(15068730-15068872)
chr8 (109-236)||(15174007-15174134)
chr8 (109-243)||(2183779-2183913)
chr8 (109-243)||(2190021-2190155)
chr8 (112-243)||(40789395-40789526)
chr8 (109-251)||(10297260-10297402)
chr8 (109-251)||(8030943-8031085)
[»] chr4 (22 HSPs)
chr4 (109-251)||(31782424-31782566)
chr4 (109-251)||(15733662-15733804)
chr4 (109-251)||(21544388-21544530)
chr4 (109-243)||(568226-568360)
chr4 (109-251)||(30672772-30672914)
chr4 (109-229)||(1866753-1866873)
chr4 (109-243)||(10574577-10574711)
chr4 (126-243)||(45065075-45065192)
chr4 (176-251)||(11172845-11172920)
chr4 (176-251)||(24637070-24637145)
chr4 (109-243)||(30266482-30266617)
chr4 (109-243)||(30285571-30285706)
chr4 (109-243)||(18423399-18423533)
chr4 (109-243)||(47103542-47103676)
chr4 (122-243)||(29527635-29527756)
chr4 (193-251)||(41915129-41915187)
chr4 (193-251)||(31416074-31416132)
chr4 (109-243)||(16216805-16216939)
chr4 (109-164)||(31416144-31416199)
chr4 (185-251)||(425731-425797)
chr4 (109-150)||(11172777-11172818)
chr4 (30-75)||(44317287-44317332)
[»] chr2 (13 HSPs)
chr2 (109-243)||(30978729-30978863)
chr2 (109-243)||(38342669-38342803)
chr2 (109-242)||(43371360-43371493)
chr2 (112-251)||(24051759-24051898)
chr2 (109-243)||(42576416-42576550)
chr2 (112-243)||(14331334-14331465)
chr2 (109-251)||(6164621-6164763)
chr2 (109-243)||(44057678-44057812)
chr2 (112-243)||(4427731-4427862)
chr2 (109-251)||(18485449-18485596)
chr2 (126-243)||(3546987-3547104)
chr2 (179-251)||(26755626-26755699)
chr2 (38-75)||(9632143-9632180)
[»] chr1 (9 HSPs)
chr1 (109-251)||(19003797-19003939)
chr1 (109-243)||(19892779-19892913)
chr1 (112-243)||(10450210-10450341)
chr1 (109-243)||(16237455-16237589)
chr1 (109-247)||(35077336-35077473)
chr1 (112-239)||(48024422-48024549)
chr1 (176-243)||(37032211-37032278)
chr1 (193-243)||(12718916-12718966)
chr1 (203-240)||(23058254-23058291)
[»] chr3 (4 HSPs)
chr3 (112-243)||(40796288-40796419)
chr3 (109-251)||(2487598-2487740)
chr3 (109-243)||(1772550-1772684)
chr3 (122-243)||(23329980-23330101)
[»] chr5 (13 HSPs)
chr5 (109-251)||(12250776-12250917)
chr5 (109-248)||(43523564-43523703)
chr5 (122-243)||(20633997-20634118)
chr5 (122-243)||(20650111-20650232)
chr5 (112-243)||(2681023-2681154)
chr5 (109-243)||(23045142-23045276)
chr5 (109-239)||(18116660-18116790)
chr5 (109-243)||(12915278-12915410)
chr5 (179-243)||(34259134-34259198)
chr5 (109-215)||(12712684-12712790)
chr5 (109-215)||(12773948-12774054)
chr5 (176-243)||(10834081-10834148)
chr5 (30-75)||(18206765-18206810)
[»] chr6 (4 HSPs)
chr6 (109-251)||(29200028-29200170)
chr6 (176-243)||(9458535-9458602)
chr6 (109-248)||(18908697-18908836)
chr6 (109-243)||(9458123-9458257)
[»] scaffold0015 (1 HSPs)
scaffold0015 (109-248)||(56043-56182)
[»] scaffold0184 (1 HSPs)
scaffold0184 (174-251)||(2837-2914)
[»] scaffold0008 (2 HSPs)
scaffold0008 (109-243)||(67552-67686)
scaffold0008 (109-243)||(75395-75529)
[»] scaffold0059 (1 HSPs)
scaffold0059 (109-243)||(69898-70032)
[»] scaffold0013 (2 HSPs)
scaffold0013 (109-243)||(105620-105754)
scaffold0013 (179-243)||(128272-128336)


Alignment Details
Target: scaffold0182 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 16771 - 16913
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  16771 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacatttttttatcaaataattcggttggtcttttaactatcaatgaa 16870  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  16871 agttcttatatcatgataattatcaaaccaaataacatggcat 16913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 16699 - 16740
Alignment:
Q  37 cccccaatgggttcgggtattcccgtccccgcattgaatcaa 78  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  16699 cccccaatgggttcgggtatttccgtccccgcattgaatcaa 16740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 21750594 - 21750728
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||       |  ||||||||  ||||||||||||||||||||||||    
T  21750594 aagcttcaatgacaatgttgtaatgcattatccaacaatttttgttcattttaacattttcttactaaataatttagttggtcttttaactatcaatgaa 21750693  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    ||||| |||||||||| ||||||||||||||||||    
T  21750694 agttcatatatcatgacaattatcaaaccaaataa 21750728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 18683782 - 18683924
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| ||||| |||||||||| |||||||||||| | |||||||||||       ||| |||||| | |||| || ||||||||||||||||    
T  18683782 aagcttcaatgataatgtagtaatgcattatccaacaatttgcgctcattttaacatttccttatcgaataatccagttgatcatttaactatcaatgaa 18683881  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    | |||||||||||||| |||||||||||||||||| |||||||    
T  18683882 aattcttatatcatgacaattatcaaaccaaataacatggcat 18683924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 22962372 - 22962514
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||| | ||||||||| |       | | ||||||||||||| || ||||||||||  ||||    
T  22962372 aagcttcaatggtaatgttgtaatgcattatccaacaatttgcgctcattttaaaattttgttaccgaataattcggttgatcctttaactatccgtgaa 22962471  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||||| |||||||||| ||||||| |||||||    
T  22962472 agttcttatatcatgacaattatcaaatcaaataacatggcat 22962514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 30839419 - 30839285
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||    |||||||||||       ||| ||||||| ||||| || ||||||||||||||||    
T  30839419 aagcttcaatggtaatgttgtaatgcattatccaacaatttacactcattttaacatttccttatcgaataatttggttgatcctttaactatcaatgaa 30839320  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||||| ||||||||||| ||||    
T  30839319 agttcttatatcatgatagttatcaaaccacataa 30839285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 42908315 - 42908173
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| ||||| |||||| | |||||||||||       | | ||||||||||||| || | ||||||||  ||||    
T  42908315 aagcttcaatggtaatgttgtaatgcattatccaataatttgcgctcattttaacattttgttaccgaataattcggttgctcctataactatccgtgaa 42908216  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  42908215 agttcttatatcatgacaattatcaaaccaaataacatggcat 42908173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 32546000 - 32546142
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| ||| || || ||||||||||||||||||   ||||||||||||       | | ||||||||||||| || ||||||||||||| ||    
T  32546000 aagcttcaatgataatattttattgcattgtccaacaatttacattcattttaacatttccttaacgaataattcggttgctcctttaactatcaataaa 32546099  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||||| |||||  ||||||||||| |||||||    
T  32546100 agttcttatatcatgacaattaataaaccaaataacatggcat 32546142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 37103412 - 37103270
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||| |||||||||  |||||||||||  ||||||||||||       | | ||| ||||||||| || ||||| ||||||||||    
T  37103412 aagcttcaatggtaatgttataatgcattagccaacaatttgcattcattttaacatttccttaccgaattattcggttgctcctttaattatcaatgaa 37103313  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||| ||||||||||| |||||||||||||||||| |||||||    
T  37103312 agttattatatcatgacaattatcaaaccaaataacatggcat 37103270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 2471803 - 2471937
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| ||||| |||||| | | |||||||||       |||| |||||| ||||| || |||||| ||||||||     
T  2471803 aagcttcaatggtaatattgtaatgcattatccaagaatttgcgcttattttaacatcttcatatcagataatttggttgctcctttaaccatcaatgag 2471902  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||||| ||||||||||||||||    
T  2471903 agttcttatatcatgatagttatcaaaccaaataa 2471937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 29015243 - 29015109
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||| ||| | |||||||||| | |||||||||||       | | ||||||||| ||| || ||||||||||||| ||    
T  29015243 aagcttcaatggtaatgttgtaatgtattattcaacaatttgcgctcattttaacattttcttaccgaataattcgattgctcctttaactatcaataaa 29015144  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||| ||||||||||| ||||||||||||||||||    
T  29015143 agtttttatatcatgacaattatcaaaccaaataa 29015109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 31425820 - 31425950
Alignment:
Q  112 cttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagt 211  Q
    ||||||| | ||||||||||| |||| |||||||||||  | |||||||||||       ||| ||||||||||||| |  |||||||  ||||||||||    
T  31425820 cttcaataataatgttgtaatacattatccaacaatttacgctcattttaacatttccttatcgaataattcggttgcttctttaactg-caatgaaagt 31425918  T
Q  212 tcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||||| ||||||||||||||||||    
T  31425919 tcttatatcatgacaattatcaaaccaaataa 31425950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 27062549 - 27062415
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| | ||| |||||| | |||||||||||       | | ||||||| ||||| || |||||| |||||||||    
T  27062549 aagcttcaatggtaatattgtaatgcattattcaagaatttgcgctcattttaacatttccttaccgaataatttggttgctcctttaaccatcaatgaa 27062450  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    | |||||||||||| ||||||||||||||||||||    
T  27062449 aattcttatatcataataattatcaaaccaaataa 27062415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 29157161 - 29157291
Alignment:
Q  113 ttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagtt 212  Q
    |||||||  ||| |||||||||||| | ||| |||||| ||| |||||||||       | | ||||||||||||| || |||| | |||||||||||||    
T  29157161 ttcaatggtaatattgtaatgcattatgcaataatttgcgttgattttaacattttcttaccgaataattcggttgctcctttagccatcaatgaaagtt 29157260  T
Q  213 cttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||| ||||||||||||||||    
T  29157261 cttatatcatgatagttatcaaaccaaataa 29157291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 43218091 - 43218225
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||  ||| |||||||| ||||| |||||| | ||||||||| |       ||| ||||||||||||| || |||||| |||||||||    
T  43218091 aagcttcaatggtaacattgcaatgcattatccaataatttgcgctcattttaaaattttcttatcgaataattcggttgctcctttaaccatcaatgaa 43218190  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||| |||||| ||||||||||||||||    
T  43218191 agttcttatattatgatagttatcaaaccaaataa 43218225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 28309301 - 28309435
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |  ||  ||||| | |||||||||||       |||||| |||| ||||| || || |||||||||||||    
T  28309301 aagcttcaatggtaatgttgtaatgcattatgtaatcatttgcgctcattttaacatttccttatcaaaaaatttggttgctccttcaactatcaatgaa 28309400  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
     ||||||||||||||| ||||||||||| ||||||    
T  28309401 tgttcttatatcatgacaattatcaaactaaataa 28309435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 21750515 - 21750563
Alignment:
Q  30 atccccacccccaatgggttcgggtattcccgtccccgcattgaatcaa 78  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21750515 atccccacctccaatgggttcgggtattcccgtccccgcattgaatcaa 21750563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 27062951 - 27063082
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||  |||||||||||| || ||||||||  |||||||||||||       |   |||||||| |||| |  ||||||||||||||||    
T  27062951 aagcttcaatggtaacattgtaatgcattatcgaacaattttcgttcattttaacatttccttactgaataattcagttgttgctttaactatcaatgaa 27063050  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||   |||| ||||||||||||||||||    
T  27063051 agttcttat---atgagaattatcaaaccaaataa 27063082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 44845374 - 44845325
Alignment:
Q  194 ttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataa 243  Q
    ||||| ||| ||||||||||||||||||| ||| ||||||||||||||||    
T  44845374 ttaaccatcgatgaaagttcttatatcataatagttatcaaaccaaataa 44845325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 4594420 - 4594286
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||       | | ||||||||||||| || ||||||||||||||||    
T  4594420 aagcttcaatgataatgttgtaatgaattatccaacaatttgtgctcattttaacattttcttaacgaataattcggttgctcctttaactatcaatgaa 4594321  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  4594320 agttcttatatcatgacaattatcaaaccaaataa 4594286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 15068872 - 15068730
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| |||||||||||||||| |||||||||||| |||||||||||||       ||  ||||||||||||| || |||| |||||||||||    
T  15068872 aagcttcaatgataatgttgtaatgcattatccaacaatttgcgttcattttaacatttccttattgaataattcggttgatcctttacctatcaatgaa 15068773  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    | |||||||||||||| |||||||||||||||||| |||||||    
T  15068772 aattcttatatcatgacaattatcaaaccaaataacatggcat 15068730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 15174134 - 15174007
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  || ||||||||||||| |||||||||||||| |||||||||||       | | ||||||||||||| || ||||||||||||||||    
T  15174134 aagcttcaatggtaacgttgtaatgcattatccaacaatttgtgctcattttaacatctccttaccgaataattcggttgctcctttaactatcaatgaa 15174035  T
Q  209 agttcttatatcatgataattatcaaac 236  Q
    |||||||||||||||| |||||||||||    
T  15174034 agttcttatatcatgacaattatcaaac 15174007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 2183913 - 2183779
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||| | ||||||||| |       | | ||||||||||||| || |||||||||| |||||    
T  2183913 aagcttcaatggtaatgttgtaatgcattatccaacaatttgcgctcattttaaaattttgttaccgaataattcggttgctcctttaactatccatgaa 2183814  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  2183813 agttcttatatcatgacaattatcaaaccaaataa 2183779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 2190155 - 2190021
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||| | ||||||||| |       | | ||||||||||||| || ||||||||||  ||||    
T  2190155 aagcttcaatggtaatgttgtaatgcattatccaacaatttgcgctcattttaaaattttgttaccgaataattcggttgctcctttaactatccgtgaa 2190056  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  2190055 agttcttatatcatgacaattatcaaaccaaataa 2190021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 40789395 - 40789526
Alignment:
Q  112 cttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagt 211  Q
    ||||||||  ||| || ||||||||| ||||| |||||| | |||||||||||       | ||||||| ||||||| || |||||| ||||||||||||    
T  40789395 cttcaatggtaatattataatgcattatccaagaatttgcgctcattttaacatttccttaccaaataactcggttgctcctttaaccatcaatgaaagt 40789494  T
Q  212 tcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||||||| ||||||||||||||||    
T  40789495 tcttatatcatgatagttatcaaaccaaataa 40789526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 10297260 - 10297402
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    ||||||||| ||  ||||||||||||||| ||||||||||||  ||||||||||||       | | ||||||||||||  || ||||||||||| ||||    
T  10297260 aagcttcaaggatgatgttgtaatgcattatccaacaatttgcattcattttaacattttcttaccgaataattcggtttctcctttaactatcagtgaa 10297359  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||| | | | |||||||||||||| |||||||    
T  10297360 agttcttatatcatcacagtcatcaaaccaaataacatggcat 10297402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 8030943 - 8031085
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||| | ||||||| |||||||| ||| | | |||||||||       | |||||||||| |||  || ||||| || |||||||    
T  8030943 aagcttcaatggtaatgttctgatgcattatccaacaacttgcgcttattttaacatttccttaccaaataattcagtttctcctttaattaccaatgaa 8031042  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    | |||||||||||| | |||||||||||||||||| |||||||    
T  8031043 atttcttatatcataacaattatcaaaccaaataacatggcat 8031085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 31782424 - 31782566
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| || |||||| ||||||||||||||||       ||  |||||||| |||| |||||||||||||||||||    
T  31782424 aagcttcaatggtaatattgtaatgcattatcgaacaatctgtgttcattttaacatttccttattgaataattcagttgctcttttaactatcaatgaa 31782523  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  31782524 agttcttatatcatgacaattatcaaaccaaataagatggcat 31782566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 15733804 - 15733662
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| |||||||||||| ||| ||||||||        ||| ||||||||||||| || ||||||||||||||||    
T  15733804 aagcttcaatggtaatattgtaatgcattatccaacaatttgcgtttattttaacccttccttatcgaataattcggttgctcctttaactatcaatgaa 15733705  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||| ||||||||| |||||||||||||||||| |||||||    
T  15733704 agttctcatatcatgacaattatcaaaccaaataacatggcat 15733662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 21544388 - 21544530
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||| ||||||||| |||||||||||| | |||||||||||       | | ||||||||||| | || ||||||||||  ||||    
T  21544388 aagcttcaatggtaatgttataatgcattatccaacaatttgcgctcattttaacattttgttaccgaataattcggtagctcctttaactatccgtgaa 21544487  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  21544488 agttcttatatcatgacaattatcaaaccaaataacatggcat 21544530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 568226 - 568360
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||| ||||| ||| |||||||||||| | |||||||||||       | | ||||||||||||| || ||||||||||  ||||    
T  568226 aagcttcaatgctaatgttataatgtattatccaacaatttgcgctcattttaacattttgttaccgaataattcggttgctcctttaactatccgtgaa 568325  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  568326 agttcttatatcatgacaattatcaaaccaaataa 568360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 30672772 - 30672914
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| |||||||||||||||| | |||||||||| | | |||||||||       | | ||||||||||||| || |||||||||   ||||    
T  30672772 aagcttcaatgataatgttgtaatgcattattcaacaatttgcgcttattttaacattttgttaccgaataattcggttgctcctttaactattcgtgaa 30672871  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||||| ||| |||||||||||||| |||||||    
T  30672872 agttcttatatcatgacaatcatcaaaccaaataacatggcat 30672914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 1866873 - 1866753
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||| | ||||||||| |       | | ||||||||||||| || ||||||||||||||||    
T  1866873 aagcttcaatggtaatgttgtaatgcattatccaacaatttgcgctcattttaaaatttccttaccgaataattcggttgctcctttaactatcaatgaa 1866774  T
Q  209 agttcttatatcatgataatt 229  Q
    |||||||||||||||| ||||    
T  1866773 agttcttatatcatgacaatt 1866753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 10574711 - 10574577
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| ||| |||||||| ||||| |||||||| |||||||||||       | | ||||||| ||||| || |||||| ||||| |||    
T  10574711 aagcttcaatggtaatattgcaatgcattatccaagaatttgtgctcattttaacatttccttaccgaataatttggttgctcctttaaccatcaacgaa 10574612  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||||| ||||||||||||||||    
T  10574611 agttcttatatcatgatagttatcaaaccaaataa 10574577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 45065075 - 45065192
Alignment:
Q  126 ttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagttcttatatcatgat 225  Q
    |||||||| ||| ||||| ||||||||||||||||||||       | | ||||||| ||||  || ||||||||||||||||||||| ||||||||||     
T  45065075 ttgtaatgtattatccaataatttgtgttcattttaacatttctttaccgaataatttggtttctcctttaactatcaatgaaagttcgtatatcatgac 45065174  T
Q  226 aattatcaaaccaaataa 243  Q
    ||||||||||||||||||    
T  45065175 aattatcaaaccaaataa 45065192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 11172845 - 11172920
Alignment:
Q  176 aataattcggttggtcttttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    ||||||||||||| || ||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||||    
T  11172845 aataattcggttgctcctttaactatccgtgaaagttcttatatcatgacaattatcaaaccaaataacatggcat 11172920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 24637070 - 24637145
Alignment:
Q  176 aataattcggttggtcttttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||| |||| |  |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  24637070 aataattcagttgcttctttaactatcaatgaaagttcttatatcatgacaattatcaaaccaaataacatggcat 24637145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 30266617 - 30266482
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggt-cttttaactatcaatga 207  Q
    |||||||||||  ||| |||||||||||| ||||| |||||| | |||||||||||       |   ||||||||||||| | | |||||| ||||||||    
T  30266617 aagcttcaatggtaatattgtaatgcattatccaataatttgcgctcattttaacatttccttactgaataattcggttgcttcctttaaccatcaatga 30266518  T
Q  208 aagttcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30266517 aagttcttatatcatgatagttatcaaaccaaataa 30266482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 30285571 - 30285706
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggt-cttttaactatcaatga 207  Q
    |||||||||||  ||| |||||||||||| ||||| |||||| | |||||||||||       |   ||||||||||||| | | |||||| ||||||||    
T  30285571 aagcttcaatggtaatattgtaatgcattatccaataatttgcgctcattttaacatttccttactgaataattcggttgcttcctttaaccatcaatga 30285670  T
Q  208 aagttcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30285671 aagttcttatatcatgatagttatcaaaccaaataa 30285706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 18423399 - 18423533
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    ||||||||||| |||| |||||||||||| || || |||||| | | ||||||||        | |||||||||| |||| || ||||||||||||||||    
T  18423399 aagcttcaatggcaatattgtaatgcattatctaataatttgcgcttattttaacttttccttaccaaataattcagttgctcctttaactatcaatgaa 18423498  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||| |||||||| |||| ||||||||||||||||    
T  18423499 agtttttatatcaagatagttatcaaaccaaataa 18423533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 47103542 - 47103676
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| ||| ||||| || ||| ||||| |||||| |||||||||||||       | | |||||||| |||  || ||||||||||||| ||    
T  47103542 aagcttcaatgataattttgtattgtattatccaaaaatttgcgttcattttaacatttccttaccgaataattcagtttctcctttaactatcaataaa 47103641  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||  ||||||||||||||||||    
T  47103642 agttcttatatcatgccaattatcaaaccaaataa 47103676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 29527635 - 29527756
Alignment:
Q  122 aatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagttcttatatca 221  Q
    |||||||||||||||| |||||||||||| | | ||||||||        | | |||||||  |||| || |||||||||||||||||||||||||||||    
T  29527635 aatgttgtaatgcattatccaacaatttgcgcttattttaacctttccttaccgaataatttagttgctcctttaactatcaatgaaagttcttatatca 29527734  T
Q  222 tgataattatcaaaccaaataa 243  Q
    ||| |||||||||| |||||||    
T  29527735 tgacaattatcaaatcaaataa 29527756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 41915187 - 41915129
Alignment:
Q  193 tttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||    
T  41915187 tttaactatcagtgaaagttcttatatcatgacaattatcaaaccaaataacatggcat 41915129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 31416132 - 31416074
Alignment:
Q  193 tttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||    
T  31416132 tttaactatcagtgaaagttcttatatcatgacaattatcaaaccaactaacatggcat 31416074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 16216939 - 16216805
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| ||| ||||||||||||   ||| |||||| | |||||||||||       | | ||||||| ||||| || |||||| || ||| ||    
T  16216939 aagcttcaatgataatattgtaatgcattactcaagaatttgcgctcattttaacattttcttaccgaataatttggttgctcctttaaccataaattaa 16216840  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    | || ||||||||||||||||||||||||||||||    
T  16216839 actttttatatcatgataattatcaaaccaaataa 16216805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 31416199 - 31416144
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaaca 164  Q
    |||||||||||| |||||||||||||||| |||||||||||| | |||||||||||    
T  31416199 aagcttcaatgataatgttgtaatgcattatccaacaatttgcgctcattttaaca 31416144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 425731 - 425797
Alignment:
Q  185 gttggtcttttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||| |||||||| ||||||||  |||| ||||| ||||| ||||||||||| |||||| |||||||    
T  425731 gttgttcttttaaatatcaatggtagtttttataacatgacaattatcaaacaaaataacatggcat 425797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 11172777 - 11172818
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttg 150  Q
    |||||||||||  |||||||||||||||| ||||||||||||    
T  11172777 aagcttcaatggtaatgttgtaatgcattatccaacaatttg 11172818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 44317287 - 44317332
Alignment:
Q  30 atccccacccccaatgggttcgggtattcccgtccccgcattgaat 75  Q
    ||||||| |||| | |||||||||||| ||||||||||||||||||    
T  44317287 atccccatccccgacgggttcgggtatccccgtccccgcattgaat 44317332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 30978729 - 30978863
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||||||||||||||||||||||||||||  | |||||||||||       ||| |||||||| |||| || ||||||||||||||||    
T  30978729 aagcttcaatggtaatgttgtaatgcattgtccaacaatttacgctcattttaacattttcttatcgaataattcagttgctcctttaactatcaatgaa 30978828  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  30978829 agttcttatatcatgacaattatcaaaccaaataa 30978863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 38342803 - 38342669
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| |||||||||||| |||||||||||||       | | ||| ||||||||| || ||||||||||||||||    
T  38342803 aagcttcaatggtaattttgtaatgcattatccaacaatttgcgttcattttaacatttccttaccgaattattcggttgctcctttaactatcaatgaa 38342704  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  38342703 agttcttatatcatgacaattatcaaaccaaataa 38342669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 43371360 - 43371493
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||| | |||||||||||       | | ||||||||||||  || ||||||||||||||||    
T  43371360 aagcttcaatggtaatgttgtaatgcattatccaacaatttgcgctcattttaacattttcttaccgaataattcggtttctcctttaactatcaatgaa 43371459  T
Q  209 agttcttatatcatgataattatcaaaccaaata 242  Q
    |||||||||||||||| |||||||||||||||||    
T  43371460 agttcttatatcatgacaattatcaaaccaaata 43371493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 24051898 - 24051759
Alignment:
Q  112 cttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagt 211  Q
    ||||||||| |||||| ||||||||| |||||||||||| | |||||||||||       | | ||||||| ||||| || |||||||||||||||||||    
T  24051898 cttcaatgataatgttataatgcattatccaacaatttgcgctcattttaacattttcttaccgaataatttggttgctcctttaactatcaatgaaagt 24051799  T
Q  212 tcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    ||||||||||| | || |||||||||||||||||||||||    
T  24051798 tcttatatcatcacaactatcaaaccaaataatatggcat 24051759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 42576416 - 42576550
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||| | ||||||||| |       | ||||||||||| ||| || ||||||||||  ||||    
T  42576416 aagcttcaatggtaatgttgtaatgcattatccaacaatttgcgctcattttaaaattttgttaccaaataattcgattgctcctttaactatccgtgaa 42576515  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  42576516 agttcttatatcatgacaattatcaaaccaaataa 42576550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 14331334 - 14331465
Alignment:
Q  112 cttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagt 211  Q
    ||||||||  |||||| | ||||||| |||||||||||| | |||||||||||       ||| || ||||| |||| || |||||||||||||||||||    
T  14331334 cttcaatggtaatgttatgatgcattatccaacaatttgcgctcattttaacatttccttatcgaacaattcagttgctcctttaactatcaatgaaagt 14331433  T
Q  212 tcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||| |||||||||||||||||||    
T  14331434 tcttatatcatgttaattatcaaaccaaataa 14331465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 6164763 - 6164621
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| ||||||||| |    || ||||||||       ||| ||||||| ||||| || ||||||||||||||||    
T  6164763 aagcttcaatggtaatgttgtaatgcattatccaacaatattcactctttttaacattttcttatcgaataatttggttgctcctttaactatcaatgaa 6164664  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    ||||| |||||||||| |||||||||| ||||||| |||||||    
T  6164663 agttcatatatcatgacaattatcaaatcaaataacatggcat 6164621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 44057678 - 44057812
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||  ||||||||||| |       | | ||||||||||||| |  ||||||||||  | ||    
T  44057678 aagcttcaatggtaatgttgtaatgcattatccaacaatttacgttcattttaaaattttgttaccgaataattcggttgcttctttaactatccgtaaa 44057777  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  44057778 agttcttatatcatgacaattatcaaaccaaataa 44057812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 4427731 - 4427862
Alignment:
Q  112 cttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagt 211  Q
    ||||||||  ||| ||||||| |||| ||||| |||||| | |||||||||||       ||| |||||||  |||| || |||||| ||||||||||||    
T  4427731 cttcaatggtaatattgtaatacattatccaataatttgcgctcattttaacatttccttatcgaataattaagttgctcctttaaccatcaatgaaagt 4427830  T
Q  212 tcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||||||| ||||||||||||||||    
T  4427831 tcttatatcatgatagttatcaaaccaaataa 4427862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 18485449 - 18485596
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| || ||||||||| || ||||||||| |||||||||||||       | | ||||||||||||| || ||||||||||||||||    
T  18485449 aagcttcaatggtaatattataatgcattatcgaacaatttgcgttcattttaacatttccttaccgaataattcggttgctcctttaactatcaatgaa 18485548  T
Q  209 agttcttatatcatgata-----attatcaaaccaaataatatggcat 251  Q
    | |||||||||||||| |     ||||||||||||||||| |||||||    
T  18485549 aattcttatatcatgacatgacaattatcaaaccaaataagatggcat 18485596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 3546987 - 3547104
Alignment:
Q  126 ttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagttcttatatcatgat 225  Q
    |||||||||||| |||||||||||| |||||||||||||       | | |||||||| |||  || ||||||||||||| ||||||  ||||||||||     
T  3546987 ttgtaatgcattatccaacaatttgcgttcattttaacatttatttaccgaataattcagtttctcctttaactatcaataaaagtttgtatatcatgac 3547086  T
Q  226 aattatcaaaccaaataa 243  Q
    ||||||||||||||||||    
T  3547087 aattatcaaaccaaataa 3547104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 26755626 - 26755699
Alignment:
Q  179 aattcggttggtcttttaactatcaatgaaagttctt-atatcatgataattatcaaaccaaataatatggcat 251  Q
    ||||| |||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  26755626 aattcagttgctcctttaactatcaatgaaagttctttatatcatgacaattatcaaaccaaataacatggcat 26755699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 9632143 - 9632180
Alignment:
Q  38 ccccaatgggttcgggtattcccgtccccgcattgaat 75  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  9632143 ccccaacgggttcgggtatccccgtccccgcattgaat 9632180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 19003939 - 19003797
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||| | |||||||||||       ||| | ||||||||||| || ||||||||||||||||    
T  19003939 aagcttcaatggtaatgttgtaatgcattatccaacaatttgcgctcattttaacatttccttatcgattaattcggttgatcctttaactatcaatgaa 19003840  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    | |||||||||||||| |||||||||||||||||| |||||||    
T  19003839 aattcttatatcatgacaattatcaaaccaaataacatggcat 19003797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 19892779 - 19892913
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| ||| |||||||||||| || ||||||||  |||||||||||||       | ||||||||||||||| || ||||| ||||||||||    
T  19892779 aagcttcaatgataatattgtaatgcattatcgaacaattttcgttcattttaacatttccttaccaaataattcggttgctcctttaattatcaatgaa 19892878  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    | |||||||||||||| ||||||||||||||||||    
T  19892879 atttcttatatcatgacaattatcaaaccaaataa 19892913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 10450341 - 10450210
Alignment:
Q  112 cttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagt 211  Q
    ||||||||  ||| |||||||||||| |||||||||||| |||||||||||||       ||| ||||||||||||  || ||||||||||||| |||||    
T  10450341 cttcaatggtaatattgtaatgcattatccaacaatttgcgttcattttaacatttccttatcgaataattcggtttctcctttaactatcaataaaagt 10450242  T
Q  212 tcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||||| |||||| |||||||||||    
T  10450241 tcttatatcatgacaattattaaaccaaataa 10450210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 16237589 - 16237455
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| || ||||||||| |||||||||||| ||| |||||||||       | | ||||||||| ||| || ||||||||||||||||    
T  16237589 aagcttcaatggtaatattataatgcattatccaacaatttgcgtttattttaacattttcataccgaataattcgattgctcctttaactatcaatgaa 16237490  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    | ||| |||||||||| ||||||||||||||||||    
T  16237489 aattcctatatcatgacaattatcaaaccaaataa 16237455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 35077473 - 35077336
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| |||||||||||| | |||||||||||        ||  |||||||||||| || ||||||||||| ||||    
T  35077473 aagcttcaatggtaatgttgtaatgcattatccaacaatttgcgctcattttaacattttctt-tccgataattcggttgctcctttaactatcagtgaa 35077375  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatg 247  Q
    ||||| ||| |||||| ||| ||||||||||||||||||    
T  35077374 agttcatatgtcatgacaataatcaaaccaaataatatg 35077336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 48024549 - 48024422
Alignment:
Q  112 cttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagt 211  Q
    ||||||||  |||||||||||||||| | |||||||||    | |||||||||       ||| ||||||||||||| || |||||||||||||||||||    
T  48024549 cttcaatggtaatgttgtaatgcattattcaacaatttacacttattttaacattttcttatcgaataattcggttgctcatttaactatcaatgaaagt 48024450  T
Q  212 tcttatatcatgataattatcaaaccaa 239  Q
    | ||||||||||| ||||||||||||||    
T  48024449 ttttatatcatgacaattatcaaaccaa 48024422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 37032211 - 37032278
Alignment:
Q  176 aataattcggttggtcttttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||||| || |||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  37032211 aataattcggttgctcctttaaccatcaatgaaaattcttatatcatgatagttatcaaaccaaataa 37032278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 12718966 - 12718916
Alignment:
Q  193 tttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12718966 tttaacgatcaatgaaagttcttatatcatgataattatcaaaccaaataa 12718916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 23058254 - 23058291
Alignment:
Q  203 aatgaaagttcttatatcatgataattatcaaaccaaa 240  Q
    |||||||||||||||||||||| |||||||||||||||    
T  23058254 aatgaaagttcttatatcatgacaattatcaaaccaaa 23058291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 40796419 - 40796288
Alignment:
Q  112 cttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagt 211  Q
    ||||||||| |||||||||||||||| |||||||||||| | |||||||| ||       ||| ||||||||||||| || ||||||||||  |||||||    
T  40796419 cttcaatgataatgttgtaatgcattatccaacaatttgcgctcattttagcattttgttatcgaataattcggttgctcctttaactatccgtgaaagt 40796320  T
Q  212 tcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||||| ||||||||||||||||||    
T  40796319 tcttatatcatgacaattatcaaaccaaataa 40796288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 2487598 - 2487740
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| || ||||||||| | ||||||||| |       ||| ||||||||||||| || ||||||||||  ||||    
T  2487598 aagcttcaatggtaatgttgtaatgcattatctaacaatttgcgctcattttaaaattttgttatcgaataattcggttgctcctttaactatccgtgaa 2487697  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  2487698 agttcttatatcatgacaattatcaaaccaaataacatggcat 2487740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 1772684 - 1772550
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| |||||||||||| |||||||| ||||       | | ||||||||||||| || ||||| ||||||| ||    
T  1772684 aagcttcaatggtaatattgtaatgcattatccaacaatttgcgttcatttcaacatttccttaccgaataattcggttgctcctttaagtatcaataaa 1772585  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||||||||||||||| ||||||    
T  1772584 agttcttatatcatgataattatcaaacaaaataa 1772550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 23329980 - 23330101
Alignment:
Q  122 aatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagttcttatatca 221  Q
    |||||||||||||||| ||||| |||||| | |||||||||||       | | |||||||  |||| || ||||||||||||| |||||||||||||||    
T  23329980 aatgttgtaatgcattatccaataatttgcgctcattttaacatttccttaccgaataatttagttgctcgtttaactatcaataaaagttcttatatca 23330079  T
Q  222 tgataattatcaaaccaaataa 243  Q
    ||| |||||||||||| |||||    
T  23330080 tgacaattatcaaaccgaataa 23330101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 12250776 - 12250917
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| |||||||||||| | |||||||||||        | |||||||||| ||  || ||||||||||||||||    
T  12250776 aagcttcaatggtaatattgtaatgcattatccaacaatttgcgctcattttaacatttcttact-aaataattcgtttactcctttaactatcaatgaa 12250874  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  12250875 agttcttatatcatgacaattatcaaaccaaataatatggcat 12250917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 43523564 - 43523703
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| ||| |||||||| ||| |||||||||||| | | |||||||||       ||| ||||||||| ||| || ||||||||||||||||    
T  43523564 aagcttcaatgataattttgtaatggattatccaacaatttgcgctaattttaacattttcttatcgaataattcgattgctcctttaactatcaatgaa 43523663  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatgg 248  Q
    |||||||||||||||| ||||||||| |||||||| ||||    
T  43523664 agttcttatatcatgaaaattatcaatccaaataacatgg 43523703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 20633997 - 20634118
Alignment:
Q  122 aatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagttcttatatca 221  Q
    |||||||||||||||| |||||||||||| | |||||| ||||       | | ||||||| ||||| || |||||||||||||||||||||||||||||    
T  20633997 aatgttgtaatgcattatccaacaatttgcgctcatttaaacatttacttaccgaataatttggttgttcctttaactatcaatgaaagttcttatatca 20634096  T
Q  222 tgataattatcaaaccaaataa 243  Q
    ||| ||||||||||||||||||    
T  20634097 tgacaattatcaaaccaaataa 20634118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 20650111 - 20650232
Alignment:
Q  122 aatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagttcttatatca 221  Q
    |||||||||||||||| |||||||||||| | |||||| ||||       | | ||||||| ||||| || |||||||||||||||||||||||||||||    
T  20650111 aatgttgtaatgcattatccaacaatttgcgctcatttaaacatttacttaccgaataatttggttgttcctttaactatcaatgaaagttcttatatca 20650210  T
Q  222 tgataattatcaaaccaaataa 243  Q
    ||| ||||||||||||||||||    
T  20650211 tgacaattatcaaaccaaataa 20650232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 2681023 - 2681154
Alignment:
Q  112 cttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaaagt 211  Q
    ||||||||  |||||||||||||||| ||||| |||||| | |||||||||||       ||| ||||| | ||||| || |||||||||||||||||||    
T  2681023 cttcaatggtaatgttgtaatgcattatccaataatttgagctcattttaacatttccttatcgaataacttggttgatcctttaactatcaatgaaagt 2681122  T
Q  212 tcttatatcatgataattatcaaaccaaataa 243  Q
    |||||| |||||| ||||||||||||||||||    
T  2681123 tcttatttcatgacaattatcaaaccaaataa 2681154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 23045276 - 23045142
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    ||||||||||   ||| |||||||||||| || |||||||||||||||||||||||       |   ||||||||||||| |  |||||||||||| |||    
T  23045276 aagcttcaatagtaatattgtaatgcattatcgaacaatttgtgttcattttaacatttctttactgaataattcggttgctgctttaactatcaacgaa 23045177  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||||||||||||||||||    
T  23045176 agttcttatatcatgacaattatcaaaccaaataa 23045142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 18116790 - 18116660
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||| ||| |||||||| ||| |||||||||||| | | |||||||||       ||| ||||||||| ||| || ||||||||||||| ||    
T  18116790 aagcttcaatgataattttgtaatggattatccaacaatttgcgctaattttaacattttctaatcgaataattcgattgctcctttaactatcaataaa 18116691  T
Q  209 agttcttatatcatgataattatcaaaccaa 239  Q
    |||||||||||||||| ||||||||| ||||    
T  18116690 agttcttatatcatgagaattatcaatccaa 18116660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 12915278 - 12915410
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    ||||||||| |  ||| |||||||||||| ||||| |||||| |||||||||||||       | | ||||||||||||| || |||||| |||||||||    
T  12915278 aagcttcaaaggtaatattgtaatgcattatccaataatttgcgttcattttaacattctt--accgaataattcggttgctcctttaaccatcaatgaa 12915375  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| ||| ||||||||||||||    
T  12915376 agttcttatatcatgacaatcatcaaaccaaataa 12915410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 34259134 - 34259198
Alignment:
Q  179 aattcggttggtcttttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34259134 aattcggttgttcctttaactatcaatgaaagttcttatatcatgacaattatcaaaccaaataa 34259198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 12712790 - 12712684
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| |||||||||||| |||||||||||||       | | ||||||||||||| || | ||||||||||||||    
T  12712790 aagcttcaatggtaatattgtaatgcattatccaacaatttgcgttcattttaacattttcttaccgaataattcggttgctcctctaactatcaatgaa 12712691  T
Q  209 agttctt 215  Q
    |||||||    
T  12712690 agttctt 12712684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 12774054 - 12773948
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| |||||||||||| |||||||||||||       | | ||||||||||||| || | ||||||||||||||    
T  12774054 aagcttcaatggtaatattgtaatgcattatccaacaatttgcgttcattttaacattttcttaccgaataattcggttgctcctctaactatcaatgaa 12773955  T
Q  209 agttctt 215  Q
    | |||||    
T  12773954 aattctt 12773948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 10834081 - 10834148
Alignment:
Q  176 aataattcggttggtcttttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||| |||| || |||||| ||||||||| |||| | |||||||||| ||||||||||||||||    
T  10834081 aataattcagttgttcctttaaccatcaatgaatgttcatttatcatgatagttatcaaaccaaataa 10834148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 18206765 - 18206810
Alignment:
Q  30 atccccacccccaatgggttcgggtattcccgtccccgcattgaat 75  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||||    
T  18206765 atccccatccccgatgggtttgggtattcccgtccccgcattgaat 18206810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 29200170 - 29200028
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  |||||||||||||||| ||||| |||||| |  | ||||||||       | |  |||||||||||| || ||||||||||||||||    
T  29200170 aagcttcaatggtaatgttgtaatgcattatccaaaaatttgcgcccgttttaacatttccttaccgcataattcggttgttcctttaactatcaatgaa 29200071  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  29200070 agttcttatatcatgacaattatcaaaccaaataacatggcat 29200028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 9458535 - 9458602
Alignment:
Q  176 aataattcggttggtcttttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataa 243  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9458535 aataattcggttgttcctttaactatcaatgaaagttcttatatcatgagaattatcaaaccaaataa 9458602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 18908697 - 18908836
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||| ||| ||||| |||||| | | ||||| |||       ||| ||||||||||||| || ||||||||||||||||    
T  18908697 aagcttcaatggtaattttgtaatggattatccaataatttgcgctaattttgacattttcttatcgaataattcggttgctcctttaactatcaatgaa 18908796  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatgg 248  Q
    |||||||||||||||| ||||||||| |||||||| ||||    
T  18908797 agttcttatatcatgacaattatcaatccaaataacatgg 18908836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 9458123 - 9458257
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| |||||||||||| | ||| |||||| | |||||||||||       | | ||||||| ||||| || |||||| |||||| ||    
T  9458123 aagcttcaatggtaatattgtaatgcattattcaagaatttgcgctcattttaacattttcttaccgaataatttggttgctcctttaaccatcaataaa 9458222  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||||||||||||||||||||||    
T  9458223 agttcttatatcatgataattatcaaaccaaataa 9458257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 56182 - 56043
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| || ||||||||| ||||||||||||  ||||||||||||       | | ||||||| ||||| |  |||| |||||||||||    
T  56182 aagcttcaatgttaatattataatgcattatccaacaatttgcattcattttaacatttccttaccgaataatttggttgcttctttacctatcaatgaa 56083  T
Q  209 agttcttatatcatgataattatcaaaccaaataatatgg 248  Q
    |||| |||||||| || |||||||||||||||||| ||||    
T  56082 agtttttatatcaggacaattatcaaaccaaataacatgg 56043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 2837 - 2914
Alignment:
Q  174 caaataattcggttggtcttttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataatatggcat 251  Q
    ||||||||| ||||| | ||||||||||||||||||||| ||| ||||||| |||||||||| ||||||| |||||||    
T  2837 caaataatttggttgcttttttaactatcaatgaaagttattaaatcatgacaattatcaaatcaaataacatggcat 2914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 67552 - 67686
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||| ||  |||||| ||||||||| |||||||||||  | |||||||||||       | | |||||||  |||| || |||||| |||||||||    
T  67552 aagcttcactggtaatgttctaatgcattatccaacaatttacgctcattttaacatttccttaccgaataattatgttgctcctttaaccatcaatgaa 67651  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| |||||||||| |||||||    
T  67652 agttcttatatcatgacaattatcaaatcaaataa 67686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 75395 - 75529
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||| ||  |||||| ||||||||| |||||||||||  | |||||||||||       | | |||||||  |||| || |||||| |||||||||    
T  75395 aagcttcactggtaatgttctaatgcattatccaacaatttacgctcattttaacatttccttaccgaataattatgttgctcctttaaccatcaatgaa 75494  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    |||||||||||||||| |||||||||| |||||||    
T  75495 agttcttatatcatgacaattatcaaatcaaataa 75529  T

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Target: scaffold0059 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 69898 - 70032
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| || ||||||||| || ||||||||||| |||||||||||       | | || | |||||||| ||  ||||| |||||||||    
T  69898 aagcttcaatggtaatattttaatgcattatctaacaatttgtggtcattttaacatttccttaccgaaaagttcggttgctcccttaaccatcaatgaa 69997  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    | ||||||||||| ||||  |||||||||||||||    
T  69998 atttcttatatcaagatagctatcaaaccaaataa 70032  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 105754 - 105620
Alignment:
Q  109 aagcttcaatgacaatgttgtaatgcattgtccaacaatttgtgttcattttaacannnnnnnatcaaataattcggttggtcttttaactatcaatgaa 208  Q
    |||||||||||  ||| || ||||||||| || || |||||||| |||||||||||       | | || | |||||||| ||  ||||| |||||||||    
T  105754 aagcttcaatggtaatattttaatgcattatctaataatttgtggtcattttaacatttccttaccgaaaagttcggttgctcccttaaccatcaatgaa 105655  T
Q  209 agttcttatatcatgataattatcaaaccaaataa 243  Q
    | ||||||||||| ||||  |||||||||||||||    
T  105654 atttcttatatcaagatagctatcaaaccaaataa 105620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 128336 - 128272
Alignment:
Q  179 aattcggttggtcttttaactatcaatgaaagttcttatatcatgataattatcaaaccaaataa 243  Q
    |||| ||||| || |||||| || ||||||| ||||||||||| ||||  |||||||||||||||    
T  128336 aattaggttgctcctttaaccattaatgaaatttcttatatcaagatagctatcaaaccaaataa 128272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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