View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_low_4 (Length: 616)
Name: NF0370_low_4
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 2504338 - 2504587
Alignment:
| Q |
30 |
gaaacaattatggtggaaaagtgggcattagattattgttttactataataatcagatagagacaagccatgctgattagtggttactaatccatcacaa |
129 |
Q |
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| T |
2504338 |
gaaacaattatggtggaaaagtgggcattagatcattggtttactataataatcagatagagacaagccatgctgattagtggttactaatccatcacaa |
2504437 |
T |
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| Q |
130 |
ataaggaggaagaggtagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgctagatttggaaactgtcttttttaataatgac |
229 |
Q |
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| T |
2504438 |
ataaggaggaagaggtagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgctagatttggaaactgtcttttttaataatgac |
2504537 |
T |
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| Q |
230 |
tagtgttgatcatgtactattattgtactgtataaggcactttgatcttgtac |
282 |
Q |
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||||||||||| ||||| |||||||||| |||||||||||||||||||||| |
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| T |
2504538 |
tagtgttgatcctgtac---tattgtactgcataaggcactttgatcttgtac |
2504587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 350 - 539
Target Start/End: Original strand, 2504653 - 2504842
Alignment:
| Q |
350 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
449 |
Q |
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| T |
2504653 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
2504752 |
T |
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| Q |
450 |
tttctacttcactagggtttaaactgtaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatc |
539 |
Q |
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| T |
2504753 |
tttctacttcactagggtttaaactctaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatc |
2504842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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