View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_low_40 (Length: 251)
Name: NF0370_low_40
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 18430328 - 18430165
Alignment:
| Q |
94 |
aaattaagctctcatgtcatcaagcaatttttccaataggcatgaatcttgaaatatgccaacatgaaatccaaattgat-------agttcatactccc |
186 |
Q |
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| T |
18430328 |
aaattaagctctcatgtcatcaagcaattttaccaataagcatgaatcttgaaatatgccaacttgaaatccaaattgatagttgatagttgatactccc |
18430229 |
T |
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| Q |
187 |
aagatttaattcaaacaatgaatctaattggccaaaccattagagtaattgacaattaactcaa |
250 |
Q |
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| T |
18430228 |
aaaatttaattcaaacaatgaatctaattggccaaaccatgagagtaattgacaattaactcaa |
18430165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 31022798 - 31022954
Alignment:
| Q |
92 |
ccaaattaagctctcatgtcatcaagcaatttttccaataggcatgaatcttgaaatatgccaacatgaaatccaaattgatagttcatact-cccaaga |
190 |
Q |
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| T |
31022798 |
ccaaattaagctctcatgtcatcatgcaatttgaccaataaacatgaatcttgaaccatgccaacatgaataccaaattggaaattgatactaaaaaaaa |
31022897 |
T |
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| Q |
191 |
tttaattcaaacaatgaatctaattggccaaaccattagagtaattgacaattaactcaa |
250 |
Q |
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| T |
31022898 |
ttcaattcaagcaaagaatctaa-tggtcaaaccat--gagcaattgacaattaactcaa |
31022954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 31032690 - 31032843
Alignment:
| Q |
92 |
ccaaattaagctctcatgtcatcaagcaatttttccaataggcatgaatcttgaaatatgccaacatgaaatccaaattgatagttcatactcccaagat |
191 |
Q |
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| T |
31032690 |
ccaaattaagctttcatgtcgtcaagcaatttggccaataaacatgaatcttgaactatgccaacatgaattccgaattggaaattgatact--caaaat |
31032787 |
T |
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| Q |
192 |
ttaattcaaacaatgaatctaattggccaaaccattagagtaattgacaattaactcaa |
250 |
Q |
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| T |
31032788 |
tcaattcaagcaaagaatgtaa-tggtcgaaccat--gagcaattgacaattaactcaa |
31032843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 31102825 - 31102904
Alignment:
| Q |
147 |
atatgccaacatgaaatccaaattgatagttcatactcccaagatttaattcaaacaatgaatctaattggccaaaccat |
226 |
Q |
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| T |
31102825 |
atatgccaacatgaaatccaaatttatagttgatactcctaaaattcaatacaagcaaacaatctaaatggcgaaaccat |
31102904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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