View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_low_42 (Length: 249)
Name: NF0370_low_42
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1904044 - 1903810
Alignment:
| Q |
1 |
cctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgagg |
100 |
Q |
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| T |
1904044 |
cctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgagg |
1903945 |
T |
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| Q |
101 |
tgtaaattgtttagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacg |
200 |
Q |
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| T |
1903944 |
tgcaaactgtttagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacg |
1903849 |
T |
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| Q |
201 |
tccagtgactgatttgtcaagtgtcacaactcattcatc |
239 |
Q |
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| T |
1903848 |
tccagtgactgatttgtcaagtgtcacaactcattcatc |
1903810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1908277 - 1908043
Alignment:
| Q |
1 |
cctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgagg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1908277 |
cctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgagg |
1908178 |
T |
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| Q |
101 |
tgtaaattgtttagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacg |
200 |
Q |
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| T |
1908177 |
tgcaaactgtttagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacg |
1908082 |
T |
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| Q |
201 |
tccagtgactgatttgtcaagtgtcacaactcattcatc |
239 |
Q |
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| T |
1908081 |
tccagtgactgatttgtcaagtgtcacaactcattcatc |
1908043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 1898657 - 1898605
Alignment:
| Q |
173 |
acacaatccaaataagtgcttaattacgtccagtgactgatttgtcaagtgtc |
225 |
Q |
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| T |
1898657 |
acacaattcaaatatgtgcttaattacgtcccgtgactgatttatcaagtgtc |
1898605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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