View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_low_44 (Length: 223)
Name: NF0370_low_44
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 9527518 - 9527436
Alignment:
| Q |
115 |
atatttccattgaactgcattgagtttcaaaatggtacataatggtcctaagtttaaaatcagcactctgataatgattatga |
197 |
Q |
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| T |
9527518 |
atatttccattgagctacattgagtttcaaaatggtacataatggtcctaagtttaaaatcagcactctgataatgattatga |
9527436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9527636 - 9527568
Alignment:
| Q |
1 |
cactattaatggtaaagtaattaaagctcagatctgggatactgctggccaagaaaggttcatctctca |
69 |
Q |
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| T |
9527636 |
cactattaatggtaaagtaattaaagctcagatctgggatactgctggccaagaaaggttcatctctca |
9527568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 9527388 - 9527353
Alignment:
| Q |
144 |
aaatggtacataatggtcctaagtttaaaatcagca |
179 |
Q |
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| T |
9527388 |
aaatggtacataatggtcctaagttaaaaatcagca |
9527353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 48931840 - 48931895
Alignment:
| Q |
5 |
attaatggtaaagtaattaaagctcagatctgggatactgctggccaagaaaggtt |
60 |
Q |
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| T |
48931840 |
attaatggtaaactcatcaaagctcagatctgggatactgctggccaagaaaggtt |
48931895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 18233899 - 18233848
Alignment:
| Q |
9 |
atggtaaagtaattaaagctcagatctgggatactgctggccaagaaaggtt |
60 |
Q |
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| T |
18233899 |
atggtaaagaagtgaaagcacagatctgggatactgctggacaagaaaggtt |
18233848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 31789532 - 31789578
Alignment:
| Q |
13 |
taaagtaattaaagctcagatctgggatactgctggccaagaaaggt |
59 |
Q |
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| T |
31789532 |
taaagttattaaggctcagatctgggatactgctggtcaagaaaggt |
31789578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 35195785 - 35195831
Alignment:
| Q |
13 |
taaagtaattaaagctcagatctgggatactgctggccaagaaaggt |
59 |
Q |
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| T |
35195785 |
taaagtcattaaggctcagatttgggatactgctggtcaagaaaggt |
35195831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 39434383 - 39434343
Alignment:
| Q |
21 |
ttaaagctcagatctgggatactgctggccaagaaaggttc |
61 |
Q |
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|||| |||||||||||||| ||||||||||||||| ||||| |
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| T |
39434383 |
ttaaggctcagatctgggacactgctggccaagaacggttc |
39434343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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