View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_low_6 (Length: 537)
Name: NF0370_low_6
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 277 - 530
Target Start/End: Original strand, 35288274 - 35288527
Alignment:
| Q |
277 |
gttttgtagggtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaaga |
376 |
Q |
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| T |
35288274 |
gttttgtagggtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaaga |
35288373 |
T |
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| Q |
377 |
ttggaagattaaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttca |
476 |
Q |
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| T |
35288374 |
ttggaagattaaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttca |
35288473 |
T |
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| Q |
477 |
taaccacataattctcatgttatatagttagttagtgaaccttgtttcatctca |
530 |
Q |
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| T |
35288474 |
taaccacataattctcatgttatatagttagttagtgaaccttgtttcatctca |
35288527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 86 - 265
Target Start/End: Original strand, 35287820 - 35287996
Alignment:
| Q |
86 |
catcatcactcttttcacctccatttaacaatcctaaattccagctccatcgtcttccacacgccaatgcttttccaccacttcctattcgcaaacctgg |
185 |
Q |
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| T |
35287820 |
catcaccactcttttcacctccatttaacaatcctaaattccagctccatcgtcttccacacgccaatgcttttccaccacttcctattcgcaaacctgg |
35287919 |
T |
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| Q |
186 |
tatcccttaatcgaatatcaattgttgtttttgtaattactattaagtttaaatataattttagtcatgcaattataacg |
265 |
Q |
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| T |
35287920 |
tatcccttaatcgaatatcaa---ttgtttttgtaattattattaagtttaaatataattttagtcatgcaattataacg |
35287996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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