View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0370_low_8 (Length: 486)
Name: NF0370_low_8
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_8 |
 | |
|
| [»] scaffold0568 (4 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 203 - 444
Target Start/End: Original strand, 17857767 - 17858007
Alignment:
| Q |
203 |
ttcctttggttgaatagatattaagaacccaacaaagagaagaagcattattctagaaggatggaacaccattttcactaattcactcttaaacaagaac |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17857767 |
ttcctttggttgaatagatattaagaacccaacaaagagaagaagcattattctagaaggatggaacaccattttcactaattcactcttaaacaagaac |
17857866 |
T |
|
| Q |
303 |
agaaatagaagggtatattgtttctgttttcttatggtccattcctgtagatataagcttgttatatatgccccactagatttggagggaggctttaaag |
402 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17857867 |
aaaaatagaagg-tatattgtttctgttttcttatggtccattcctgtagatataagcttgttatatatgccccactagatttggagggagactttaaag |
17857965 |
T |
|
| Q |
403 |
ctttaaagcaaagagggcctacaagaattttagattcatctc |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17857966 |
ctttaaagcaaagagggcctacaagaattttagattcatctc |
17858007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 17059513 - 17059557
Alignment:
| Q |
27 |
tgtcccaatttccccaacttatttaaggtttcagatcttgttcat |
71 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17059513 |
tgtcccagtttccccaatttatttaaggtttcagatcttgttcat |
17059557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 17059513 - 17059557
Alignment:
| Q |
117 |
tgtcccaatttccccaacttatttaaggtttcagatcttgttcat |
161 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17059513 |
tgtcccagtttccccaatttatttaaggtttcagatcttgttcat |
17059557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 1435 - 1471
Alignment:
| Q |
35 |
tttccccaacttatttaaggtttcagatcttgttcat |
71 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1435 |
tttccccaatttatttaaggtttcagatcttgttcat |
1471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 1435 - 1471
Alignment:
| Q |
125 |
tttccccaacttatttaaggtttcagatcttgttcat |
161 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1435 |
tttccccaatttatttaaggtttcagatcttgttcat |
1471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 8037 - 8073
Alignment:
| Q |
35 |
tttccccaacttatttaaggtttcagatcttgttcat |
71 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8037 |
tttccccaatttatttaaggtttcagatcttgttcat |
8073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 8037 - 8073
Alignment:
| Q |
125 |
tttccccaacttatttaaggtttcagatcttgttcat |
161 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8037 |
tttccccaatttatttaaggtttcagatcttgttcat |
8073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 309 times since January 2019
Visitors: 3059