View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0370_low_9 (Length: 470)
Name: NF0370_low_9
Description: NF0370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0370_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 150 - 449
Target Start/End: Complemental strand, 6508293 - 6507999
Alignment:
| Q |
150 |
gaagcttgtttaacctacattgtcatctaattttaacaattgagatgcataatgaattaagtgtttcagttgtgttgtgttggattataacttataagta |
249 |
Q |
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| T |
6508293 |
gaagcttatttaacctacattgtcatctaattttaacaattgagatgcataaggaattaagt--------tgtgttgtgttggattata----------- |
6508213 |
T |
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| Q |
250 |
gtatatacattttggtgaaaaggccgtgtaaaattatactaaaaagagtttgtatttgtgttgtttg---------------------tactcttgattg |
328 |
Q |
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| T |
6508212 |
-------cattttggtgaaaaggccgtgtaaaattatactaaaaagagtttgtatttgtgttgtttggctaatctctagcaatccttgtactcttgattg |
6508120 |
T |
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| Q |
329 |
gtttgatatttaatatatttttgcatttnnnnnnnngacattaacataatgtccttttccttcactcaatgatcaagtcagtgtctttaaaagacttgcc |
428 |
Q |
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| T |
6508119 |
gtttgatatttaatatatttttgcctttaaaaaaaagacattaacataatgtctttttccttctctcaatgatcaagttagtgtctttaaaagacttgcc |
6508020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 6508339 - 6508298
Alignment:
| Q |
30 |
tttagggcactctaacgcaactaatgtgcaattttgcattct |
71 |
Q |
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| T |
6508339 |
tttagggcactctaacgcaactaatgtgcaattttgcattct |
6508298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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