View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0372_high_1 (Length: 474)
Name: NF0372_high_1
Description: NF0372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0372_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 466
Target Start/End: Original strand, 29711828 - 29712265
Alignment:
| Q |
30 |
cctttatattccggaagaaagaaactgatttttaatattaatgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaa |
129 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29711828 |
cctttatatttcggaagtaagaaactggtttttaatgttgatgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaa |
29711927 |
T |
|
| Q |
130 |
ttttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatattt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
29711928 |
ttttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttctaatgttggaaagtgggtccaccacatattt |
29712027 |
T |
|
| Q |
230 |
gcaatttggattggacttgctgaatct-attnnnnnnngagcttgatcttgttccttcacaaatgtctgtgctcctaaaactttgcgccctatcagaaga |
328 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29712028 |
gcaatttggattggacttgctgaatctaataaaaaaaagagcttgatcttgttccttcacaaatgtgtgtgctcctaaaactttgcgccctatcagaaga |
29712127 |
T |
|
| Q |
329 |
tttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcatactatt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29712128 |
tttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcatactatt |
29712227 |
T |
|
| Q |
429 |
ttttccctttattataatattttccttctccctatgat |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29712228 |
ttttccctttattataatattttccttctccttatgat |
29712265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 466
Target Start/End: Complemental strand, 55803630 - 55803188
Alignment:
| Q |
30 |
cctttatattccggaagaaagaaactgatttttaatattaatgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaa |
129 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55803630 |
cctttatatttcggaagtaagaaactggtttttaatgttgatgaagtaagtttttgtttccttatgacttgaataaggatttgcgattataagaattaaa |
55803531 |
T |
|
| Q |
130 |
ttttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatattt |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||| |
|
|
| T |
55803530 |
ttttggtttaatatttctgcgtgtatgaagcgtgacatattggtctcatgtatgtataggcgtattttctaatgttggaaattaggtccaccacatattt |
55803431 |
T |
|
| Q |
230 |
gcaatttggattggacttgctgaatctattnnnnnnngagcttgatcttgttccttcacaaa--tgtc----tgtgctcctaaaactttgcgccctatca |
323 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||| |||| ||| |||||||||||||| ||||||||| |
|
|
| T |
55803430 |
gcaatttggattggacttgctcgatctaataaaaaaagagcttggtcttgttccttcacaaacgtgtcttgatgtactcctaaaactttgtgccctatca |
55803331 |
T |
|
| Q |
324 |
gaagatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcata |
423 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||| ||| |||||| |||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55803330 |
gaagatttgaataatgctaatttggtttggagagaatttgcatctgccaaatgtttgtatactacatttagctacttgaggtgggcttctaaccttcata |
55803231 |
T |
|
| Q |
424 |
ctattttttccctttattataatattttccttctccctatgat |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
55803230 |
ctattttttccctttattataatattttccttctccttatgat |
55803188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 51 - 466
Target Start/End: Complemental strand, 55808196 - 55807776
Alignment:
| Q |
51 |
aaactgatttttaatattaatgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcg |
150 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
55808196 |
aaactggtttttaatgttgatgaagtaagtttttgtttccttatgacttgaataagaatttg-gattataagaattaaattttggtttaatatttatgcg |
55808098 |
T |
|
| Q |
151 |
tgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgct |
250 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
55808097 |
tgtataaagcatgacatattggtctcatgtatgtataggcgtattttctaatgttggaaagtgggtccaccacatatttgcaatttgaattggacttgct |
55807998 |
T |
|
| Q |
251 |
gaatctattnnnnnnngagcttgatcttgttccttcacaaa--tgtc----tgtgctcctaaaactttgcgccctatcagaagatttgaattatgctaat |
344 |
Q |
| |
|
| ||||| | ||||||| ||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
55807997 |
ggatctaataaaaaaagagcttggtcttgttccttcacaaacgtgtcttgatgtactcctaaaactttgtgccctatcagaagatttgaataatgctaat |
55807898 |
T |
|
| Q |
345 |
ttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcatactattttttccctttattata |
444 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55807897 |
ttggtttggagagaatatgcatctgccaaatgtttgtatactacatttagctacttgaggtgggcttctaaccttcatgctattttttccctttattata |
55807798 |
T |
|
| Q |
445 |
atattttccttctccctatgat |
466 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
55807797 |
atattttccttctccttatgat |
55807776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 71 - 466
Target Start/End: Complemental strand, 8490425 - 8490020
Alignment:
| Q |
71 |
tgaagtaagtttttgtttccttatgacttgaataagga----ttcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgaca |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |
|
|
| T |
8490425 |
tgaagtaagtttttgtttccttatgacttgaataaggaaggattcacgattataagaattaaattttggtttaatatttctgcctctatgaagcatgaca |
8490326 |
T |
|
| Q |
167 |
tattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatctattnnnnnnn |
266 |
Q |
| |
|
|||||||||||||||||||||||| | || || |||||| || ||||| ||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
8490325 |
tattggtctcatgtatgtataggccttttatctaatttttaaacatgggt---ccacacatttgcaatttggattggacttgctggatctaataaaaaaa |
8490229 |
T |
|
| Q |
267 |
gagcttgat---cttgttccttca--caaatgtc----tgtgctcctaaaactttgcgccctatcagaagatttgaattatgctaatttggtttggagag |
357 |
Q |
| |
|
||| ||| | |||||||||||| | |||||| | |||||| |||| ||| |||| |||||||||| | |||||||||||||||| || |
|
|
| T |
8490228 |
gaggttgttggccttgttccttcaagcgaatgtcttaattatctcctatctgtttgtgccaaatcaagagatttgaataaagctaatttggtttggaaag |
8490129 |
T |
|
| Q |
358 |
aatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcatactattttttccctttattataatattttccttct |
457 |
Q |
| |
|
|||||||||| |||| || | ||||| | | | | |||||| ||||||||||||||||||| ||| ||| |||||||||| | |||||||||||||||| |
|
|
| T |
8490128 |
aatatgcattggctggatatccttatggagaagattgctactggaggtgggcttctaacctttatattatattttccctttctcataatattttccttct |
8490029 |
T |
|
| Q |
458 |
ccctatgat |
466 |
Q |
| |
|
|| |||||| |
|
|
| T |
8490028 |
ccttatgat |
8490020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 8517224 - 8517043
Alignment:
| Q |
71 |
tgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatatt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |
|
|
| T |
8517224 |
tgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttggtttaatatttctgc--ctctgaagcatgacatatt |
8517127 |
T |
|
| Q |
171 |
ggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta |
257 |
Q |
| |
|
|||||||||||||||||||| | || || |||||| || ||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
8517126 |
ggtctcatgtatgtataggccttttatctaatttttaaacatgggt---ccacacatttgcaatttggattggacttgctggatcta |
8517043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 1525474 - 1525658
Alignment:
| Q |
70 |
atgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacata- |
168 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||| |||||||| ||| |
|
|
| T |
1525474 |
atgaagtaagtttttgtttccttataacttgaataaggactcacgattataagaattaaattttggtttaata-ttctatgtgtataaagcatgatatat |
1525572 |
T |
|
| Q |
169 |
ttggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta |
257 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||||||||| | ||||| ||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
1525573 |
ttggtctcatgtatgtttaggtgtattatccaattttggtatatgggt---ccacacatttgcaatttggattggacttgttggatcta |
1525658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 8485374 - 8485243
Alignment:
| Q |
123 |
aattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccacca |
222 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| | || || |||||| || ||||| ||| |
|
|
| T |
8485374 |
aattaaattttggtttaatatttctgcctctatgaagcatgacatattggtctcatgtatgtataggccttttatctaatttttaaacatgggt---cca |
8485278 |
T |
|
| Q |
223 |
catatttgcaatttggattggacttgctgaatcta |
257 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| |
|
|
| T |
8485277 |
cacatttgcaatttggattggacttgctggatcta |
8485243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 326 - 466
Target Start/End: Complemental strand, 8516965 - 8516825
Alignment:
| Q |
326 |
agatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcatact |
425 |
Q |
| |
|
|||||||||| | |||||||||||||||| |||||||||||| |||| || | ||||| | | | | |||||| ||||||||||||||||||| ||| | |
|
|
| T |
8516965 |
agatttgaataaagctaatttggtttggaaagaatatgcattggctggatatccttatggagaagattgctactggaggtgggcttctaacctttatatt |
8516866 |
T |
|
| Q |
426 |
attttttccctttattataatattttccttctccctatgat |
466 |
Q |
| |
|
|| |||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
8516865 |
atattttccctttctcataatattttccttctccttatgat |
8516825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 466
Target Start/End: Complemental strand, 8485165 - 8485024
Alignment:
| Q |
326 |
agatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcata-c |
424 |
Q |
| |
|
|||||||||| | |||||||||||||||| |||||||||||| |||| || | ||||| | | | | |||||| ||||||||||||||||||| ||| |
|
|
| T |
8485165 |
agatttgaataaagctaatttggtttggaaagaatatgcattggctggatatccttatggagaagattgctactggaggtgggcttctaacctttatatt |
8485066 |
T |
|
| Q |
425 |
tattttttccctttattataatattttccttctccctatgat |
466 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
8485065 |
tattttttccctttctcataatattttccttctccttatgat |
8485024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 1525814 - 1525863
Alignment:
| Q |
404 |
gtgggcttctaaccttcatactattttttccctttattataatattttcc |
453 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
1525814 |
gtgggcttctaacctttatactatttcccccctttcttataatattttcc |
1525863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 15166556 - 15166740
Alignment:
| Q |
70 |
atgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatat |
169 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
15166556 |
atgaagtaagtttttgttaccttatgacttgaataaggattcacgattataagaattagattttggtttaatatttcgtcacgtatgaagcatgacatat |
15166655 |
T |
|
| Q |
170 |
tggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta |
257 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| || ||| | |||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
15166656 |
tggtctcatatatgtataggcgtattttctaattttgaaatatggat---ccacatatttgcaatttggaatggacttgctggatcta |
15166740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 15170812 - 15170998
Alignment:
| Q |
70 |
atgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacata- |
168 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15170812 |
atgaagtaagtttttgtttccttatgatttgaacaaggattcacgattataagaattaaattttggtttaatatttctgcgtgtatgaagcatgacatat |
15170911 |
T |
|
| Q |
169 |
-ttggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta |
257 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||| | || ||||| |||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
15170912 |
tttggtctcatgtatgtacaggcgtatgatataatttcgaaatttgggt---ccacatatttgcaatttggattggacttactggatcta |
15170998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 326 - 464
Target Start/End: Original strand, 15171070 - 15171208
Alignment:
| Q |
326 |
agatttgaattatgctaatttggtttggagagaatatgcatttgctgaatgttcttatagtgcatttagctacttgaggtgggcttctaaccttcatact |
425 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||||||| || | || || || |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
15171070 |
agatttgaataatgctaatttcgtttggagagaatatgtatttgctaaaattcctcatggtccattaagctacttgaggtgggcttctaacctttgtact |
15171169 |
T |
|
| Q |
426 |
attttttccctttattataatattttccttctccctatg |
464 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
15171170 |
attttttccctttcttatagtattttccttctccttatg |
15171208 |
T |
|
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